Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8l02
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15487| Best HMM Match : DUF479 (HMM E-Value=2.2) 34 0.096
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 33 0.13
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 33 0.17
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 32 0.29
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_24762| Best HMM Match : Astacin (HMM E-Value=0) 29 2.7
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 2.7
SB_49283| Best HMM Match : NapE (HMM E-Value=1.7) 29 2.7
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1) 29 2.7
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_1006| Best HMM Match : GPP34 (HMM E-Value=3.6) 29 3.6
SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5) 29 3.6
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 29 3.6
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.8
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6) 28 4.8
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 28 4.8
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059) 28 6.3
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17) 28 6.3
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 28 6.3
SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 8.3
SB_49639| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11) 27 8.3
>SB_15487| Best HMM Match : DUF479 (HMM E-Value=2.2)
Length = 508
Score = 33.9 bits (74), Expect = 0.096
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 261 IPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRER 148
+P T+Q+G GR+ R PP + RR +SP+ + R
Sbjct: 463 VPIGTTVQMGGGRKSTRPPPPRYRRRRKVSPSYPRPHR 500
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -2
Query: 216 PRTPPAGFGPRRSISPAITQRERRSDTPGS---MTAPRGPLSATYGRARWKSSKTPPQTH 46
PR P F PR SIS RRSDTP ++ PR + GR K P +T+
Sbjct: 260 PRRTPPSFTPRSSIS------RRRSDTPKKRRRISVPRRRAGSAQGRLTSKKKTPPRRTN 313
Query: 45 PRHAECASGARP 10
A A+ P
Sbjct: 314 LLEAFTAAAGTP 325
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 216 PRTPPAGFGPRRSISPAITQRERRSDTPGS---MTAPRGPLSATYGRARWKSSKTPPQ 52
PR P F PR SIS RRSDTP ++ PR + GR K KTPP+
Sbjct: 520 PRRTPPSFTPRSSIS------RRRSDTPKKRRRISVPRRRAGSAQGRITTK-KKTPPR 570
>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 493
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -2
Query: 216 PRTPPAGFGPRRSISPAITQRERRSDTPGS---MTAPRGPLSATYGRARWKSSKTPPQ 52
PR P F PR SIS RRSDTP ++ PR + GR K KTPP+
Sbjct: 232 PRRTPPSFTPRSSIS------RRRSDTPKKRRRISVPRRRAGSAQGRITTK-KKTPPR 282
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -2
Query: 276 VGGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRE-RRSDTPGSM--TAPRGP 106
+GG G+ GR +Q +G R P+ G GP P E R +PG + P+G
Sbjct: 211 IGGQGLEGRTGVQGDDGIRGPQGKQGGVGPTGGHGPPGPMGEPGRKGSPGDIGYVGPKGK 270
Query: 105 L 103
L
Sbjct: 271 L 271
>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1788
Score = 31.1 bits (67), Expect = 0.67
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = -2
Query: 258 PGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRAR 79
PG + G GR+ PRT P G G R P + + G T+P GP +A G
Sbjct: 727 PGTSPDGPGTGRKGPRTSPDGPGTGRK-GPGTSPDGPGNGRKGPGTSPDGPGNARKGPGT 785
Query: 78 WKSSKTPPQTHPRHAECASG-ARPGPG 1
+ P + G R GPG
Sbjct: 786 SPDGPGTGRKGPGTSPGGPGTGRKGPG 812
>SB_20512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = -2
Query: 267 PGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYG 88
PG G Q +G R P GPR ++ T+ ++S G+ T RG + Y
Sbjct: 241 PGAKGAQGAQGPKGNPGLRGRPGATGPRPTVGVKYTRWGKKSCPTGAQTVYRGIVGGGYY 300
Query: 87 RARWKSSK--TPPQTHPRHAECASGAR 13
S+ P+T P++ G +
Sbjct: 301 NNPGSGSQYVCIPETAPQYLTVQGGVQ 327
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 150 RRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTHPRHAECASGAR-PGP 4
RRSD G+ T+ R PL R + PP PR + + +R P P
Sbjct: 592 RRSDPSGNTTSARCPLDFASSRREVVDEEIPPPLPPRSLKSSPRSRDPSP 641
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -2
Query: 270 GPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGP 106
G I G+ T + G PP+G P+ S S +T R + G + +PR P
Sbjct: 6218 GSDIGGKPTRE-SSGTSLRGKPPSGARPKTSTSSGLTVPSVRREKSGELLSPRAP 6271
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 436 KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHKLNQK 329
K N++ K SK+T E N + D + + + K N+K
Sbjct: 261 KKNKKEKKHKSKETSSSESNKSSDSEEKAKSKKNKK 296
>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 320 KQKDSKNKLKIIRKKSGARVSPEETPFN*VKGAESPEP 207
+++DS +L+ +R+KS R PE P V G +P P
Sbjct: 334 QRRDSGGRLQHVRQKSLERFVPEVDPSQVVNGPPNPPP 371
>SB_24762| Best HMM Match : Astacin (HMM E-Value=0)
Length = 733
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 128 LPGVSLLLSRCVMAGEIERRGPKP 199
+PG+ +LSR + GE+E + PKP
Sbjct: 307 MPGLGWVLSRKIYKGELEAKWPKP 330
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -2
Query: 216 PRTP-PAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTH 46
PR P PA F PR SP T TP + +PR PL A +S +TP T+
Sbjct: 360 PRNPLPAYFTPRVLHSPPRTSL-LAYPTPRVLDSPRKPLPAYTSPCVHQSPRTPVPTY 416
>SB_49283| Best HMM Match : NapE (HMM E-Value=1.7)
Length = 363
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 409 DSKQTKHKEQNNNEDKDRQTQHKLNQK 329
+ K+TKHK+Q N +K + +H+ K
Sbjct: 302 EKKETKHKKQQENNEKKEEKRHEGGNK 328
>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
Length = 448
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 418 KSEDSKQTKHKEQNNNEDKDRQTQHKLNQ 332
K + ++ +H E+ NN+D+DR + + N+
Sbjct: 219 KRNNEEEDRHDEERNNKDEDRHDEERNNE 247
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 400 QTKHKEQNNNEDKDRQTQHKLNQ 332
+ +H E+ NNED+DR + + N+
Sbjct: 237 EDRHDEERNNEDEDRHDEERNNE 259
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -1
Query: 409 DSKQTKHKEQNNNEDKDRQTQHKLNQK 329
D + +H E+ NNE +DR + + N++
Sbjct: 150 DEHEDRHDEERNNEHEDRHDEERNNEE 176
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 116 PEARYPPPTDAPGGSPAKLPHRRTHGTQS 30
P A P P PGG + LP R H T+S
Sbjct: 105 PAAFRPRPNPLPGGESSVLPTVRAHATRS 133
>SB_1006| Best HMM Match : GPP34 (HMM E-Value=3.6)
Length = 426
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 484 ENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHKLN 335
ENKE +N +CN++ E T+ +E+ + + D T+HK N
Sbjct: 312 ENKENP-----ENDVTECNEELPEEGKPDTEKEEEKDEKKDDGSTEHKGN 356
>SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)
Length = 218
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 490 LGENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHK 341
L KERK+ + Q + ++ K + +Q HK+QN+ + +Q + K
Sbjct: 167 LKSEKERKRREKNQKRQQQRKEKQKQQKEQQQLHKQQNDQQQTKQQQEQK 216
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -1
Query: 529 PAIRPVAGRQNLGLGENKE--RKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDR 356
P + + +N L E K+ R K K + L + ++ K K+ KHKE+ E+K+R
Sbjct: 104 PTKKDPSSTENHSLLEEKDIPRDK-KSDKELKEEKKEKEKERMKKEEKHKEKTRKEEKER 162
Query: 355 QTQHKLNQK 329
+ + + +K
Sbjct: 163 EKEKEKTKK 171
>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 490 LGENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHK 341
L KERK+ + Q + ++ K + +Q HK+QN+ + +Q + K
Sbjct: 550 LKSEKERKRREKNQKRQQQRKEKQKQQKEQQQLHKQQNDQQQTKQQQEQK 599
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 110 ARYPPPTDAPGGSPAKLPHRRTHGTQSAHRGPAQVP 3
AR PP P PA+ + G HRGP Q P
Sbjct: 535 ARSPPAPGQPQYHPAQQIQYQNPGNYRVHRGPPQRP 570
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 430 NQQYKSEDSKQTKHKEQNNNEDKDRQTQHKLNQK 329
+QQ + +Q +H +Q + D+Q QH QK
Sbjct: 1111 DQQQQQRHDQQQQHHDQQQQQHHDQQQQHHEQQK 1144
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -2
Query: 183 RSISPAITQRERRSDTPGSMTAP----RGPLSATYG-RARWKSSKTPPQTHPRHAECASG 19
R+ P+ + S TP S T P R L+ + ++R +S P +HPR A G
Sbjct: 1851 RTPPPSFQKASHSSGTPRSQTPPVRWRRKSLNDSDDEQSRHRSYSNPSSSHPRSNHSALG 1910
Query: 18 ARPGP 4
+R P
Sbjct: 1911 SRSRP 1915
>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
Length = 192
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 400 QTKHKEQNNNEDKDRQTQHKLNQ 332
+ +H E+ NNED+DR + + N+
Sbjct: 108 EDRHDEERNNEDEDRHDEERNNE 130
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 409 DSKQTKHKEQNNNEDKDRQTQHKLNQ 332
+ ++ KH E+ NNE +DR + + N+
Sbjct: 93 NEEEDKHDEERNNEHEDRHDEERNNE 118
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -1
Query: 520 RPVAGRQNLGLGENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQH 344
+ +A N+ G+ + K + K N+ K ++K+ K KE+ +NE KD+++ H
Sbjct: 25 KELANGHNMSKGDETKEKPSHRAEKEQEKDNKSSKEGETKEPK-KEKADNEHKDKESGH 82
>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 190 STSLNLSRHNTTREKERYPWEYDCSQRPVIRHLRTR 83
+T+ + SRH+TTR R+ +D S V H TR
Sbjct: 121 NTTRSHSRHDTTRSHSRHDHTHDTSTLMVRPHCTTR 156
>SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
Length = 408
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 388 CVLFVYYLHSCTVG---YIFMLDFVIFSTSFF---LYSHPIPSFDARQRD 519
C L + + SC Y ++DF IFS SF+ LY+ IP F RD
Sbjct: 171 CFLPIVVMLSCNCYHPIYFPIMDFFIFSNSFWNVLLYTIRIPEFRKELRD 220
>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
Length = 398
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 361 PYLRCYFVLCVLFVYYLHS-CTVGYIFMLDFVIFSTSFFLYSHPIPSF 501
P L C FVLC+ V + S +G + D V+FS S P+ +
Sbjct: 186 PILPCSFVLCLFLVTFCDSVARLGLLVAQDPVLFSGSLRHNLDPVSQY 233
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -2
Query: 222 REPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARW 76
R PR PA PR S S + S P T+ R P + R W
Sbjct: 213 RNPRVSPAFRNPRDSPSSRNPRDSPSSRDPRDSTSSRNPRDSPASRCAW 261
>SB_18895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.9 bits (59), Expect = 6.3
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +2
Query: 71 DFHRARP*VADNGPLGAVILPGVSLLLSRCVMAGEIERRGPKPAGGVLGSLRPSPS*RVF 250
+ R R GP G+ +PG + L R M G + G G GS P P
Sbjct: 113 ELERRRYSTGPRGPAGSPGMPGRNGLDGRPGMDGPMGMPGRDGTNGKEGS--PGP----- 165
Query: 251 LPGIPGPP 274
PG PGPP
Sbjct: 166 -PGAPGPP 172
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -2
Query: 252 RNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGR--AR 79
R + + E R R+P RRS SP ++ +RS +P S R S R +R
Sbjct: 224 RKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSR 283
Query: 78 WKSSKTPPQTHPRHAECASGARP 10
+S ++ PR + P
Sbjct: 284 SRSPRSKRSRSPRKRRRSKSRSP 306
>SB_49639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 134 LGV*LLPEARYPPPTDAPGGSPAKLPHRRTHGTQSAHRG 18
LGV LLP + + PP+ A S + P RR+ A G
Sbjct: 94 LGV-LLPFSEFSPPSPAKSSSDGETPSRRSSDIAEASPG 131
>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/54 (22%), Positives = 32/54 (59%)
Frame = -1
Query: 490 LGENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHKLNQK 329
+G+ +++KK K + K +Q K + K+ + +E+ NE+++R+ + + ++
Sbjct: 1 MGKKRKKKKQKKKKKKR-KKKKQKKQKKKKEEEEEEEEENEEEERRRKRRRRRR 53
>SB_15904| Best HMM Match : Collagen (HMM E-Value=4.1e-11)
Length = 376
Score = 27.5 bits (58), Expect = 8.3
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 1/92 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSAT 94
G G PG + Q +G + P GPR A Q + P T P GP
Sbjct: 212 GSRGPPGPSGPQGQQGPPGTKGPQGFMGPRGHNGTAGQQGPQGPPGPKGDTGPAGPGGPR 271
Query: 93 YGRARWKSSKTPPQTHPRHAEC-ASGARPGPG 1
+ S T T H ++G RPG G
Sbjct: 272 GNQGPPGPSGTGDLTQCVHKTVDSTGVRPGNG 303
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,908,332
Number of Sequences: 59808
Number of extensions: 460658
Number of successful extensions: 1975
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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