Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8l02
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 33 0.19
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 32 0.34
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 31 0.59
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 30 1.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 1.4
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 29 2.4
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 29 2.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 3.1
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.1
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.1
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.1
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 28 4.1
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 4.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 4.1
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 28 4.1
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 28 4.1
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 28 4.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 4.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 4.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 4.1
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 4.1
Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 28 5.5
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 28 5.5
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 28 5.5
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 28 5.5
U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical pr... 28 5.5
U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 28 5.5
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 28 5.5
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 28 5.5
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 5.5
U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical pr... 27 7.2
U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulat... 27 7.2
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 27 7.2
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 27 7.2
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 27 7.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 27 7.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 27 7.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 27 7.2
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 27 9.5
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 27 9.5
U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set (trithorax/... 27 9.5
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 27 9.5
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 27 9.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 9.5
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 215 PEPPLLVLVHVAQSLPP*HNEREGAIPLGV*LLPEARYPPPTDAPGGSPAKLPHRRTHGT 36
P PP+ H A+S PP +R+ + P P A PP T P +R H
Sbjct: 219 PAPPIRQAAHAAESSPPPIPQRKSSAP-----APTAAAPPATKEPTDPKKAAIYRILHHR 273
Query: 35 QSAHRGPAQ 9
+ H+ A+
Sbjct: 274 RDLHKQNAR 282
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 346 VEFVCPYLRCYFVLCVLFVYYLHSCTVGYIFMLDFVIFSTSFF 474
++ V + RC CV +V ++H C +L FV+F +FF
Sbjct: 6 IDNVVNWSRCVHPSCVAWVIFIHFCFAKNCSILYFVLFQFTFF 48
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 31.1 bits (67), Expect = 0.59
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Frame = -2
Query: 279 EVGGPGIPGRNTLQLGEGRREPRTPPAGFG-PRRSISPAIT-QRERRSDTPG--SMTAPR 112
E G PG PG N L G P+ PP G P +P + Q TPG P
Sbjct: 205 EPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPGTPGPAGPPGPP 264
Query: 111 GPLSATYGRARWKSSKTPPQTHPRHAECASGARPGPG 1
GP+ G+ S P P GA PG
Sbjct: 265 GPIGPP-GQPGAPGSSQPGPQGPPGDPGIDGAPGNPG 300
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 213 RTPPAGF--GPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTHPR 40
++PPA P S SP +R RRS + AP+ + R +SK+PP P+
Sbjct: 369 KSPPARRRRSPSASKSPPAPRR-RRSPSKSRSPAPKREIPPARRRRSPSASKSPPA--PK 425
Query: 39 HAECASGARPGP 4
A+ S + P P
Sbjct: 426 RAKSRSKSPPAP 437
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 267 PGIPGRNTLQLGEGRREPRT--PPAGFGPRRSISPAITQRERRSDTPGSMTAPRGP 106
P P R G R PR PA PRR SP + RR +P S + R P
Sbjct: 461 PQAPRRRRSPSGSKSRSPRRRRSPAA-APRRRQSPQRRRSPRRRRSPSSSSRSRSP 515
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Frame = -2
Query: 267 PGIPGRNTLQL--GEGRREPR-TPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSA 97
PGIPG G G P+ PP GF P + P Q P GP+S+
Sbjct: 710 PGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSS 769
Query: 96 TYGRARWKSSKTPPQTHPRHAECASGARPGP 4
R PP R G P P
Sbjct: 770 FPPPPRGGMHHMPPPPSFRGGRGGHGGPPPP 800
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Frame = -2
Query: 216 PRTPP---AGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTH 46
PR+ P A R+S S + + +RR S + + P S+TP Q H
Sbjct: 272 PRSSPLRAAEISRRKSTSHSTSLSKRRYLRSRSRSLSKSPARRRSRHLSRSGSRTPAQRH 331
Query: 45 PRHAECASGARPG 7
R +E S R G
Sbjct: 332 SRRSESTSRRRSG 344
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -2
Query: 279 EVGGPGIPGRNTLQLGEGR---REPRTPPAGFGPRRSISPAITQRERR---SDTPGSMTA 118
+ GGPG PGR+ ++ +G + P PP GP P R+ TPG
Sbjct: 105 KAGGPGSPGRDGIRGSKGSTGDKGPNGPPGQNGP-----PGWAGRDGNIGPQGTPGGRGE 159
Query: 117 PRGP 106
P GP
Sbjct: 160 PGGP 163
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSD-TPGSMTAPRGP 106
G PG PG+ E +P P GP PA D PGS P GP
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGP 182
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 430 NQQYKSEDSKQTKHKEQNNNEDKDRQTQH 344
NQQ+++ +Q+ H+ QN+N+ ++ H
Sbjct: 139 NQQHQAGQHQQSHHQSQNHNQHRNHNQSH 167
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 430 NQQYKSEDSKQTKHKEQNNNEDKDRQTQH 344
NQQ+++ +Q+ H+ QN+N+ ++ H
Sbjct: 263 NQQHQAGQHQQSHHQSQNHNQHRNHNQSH 291
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSD-TPGSMTAPRGP 106
G PG PG+ E +P P GP PA D PGS P GP
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGP 182
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSD-TPGSMTAPRGP 106
G PG PG+ E +P P GP PA D PGS P GP
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGP 182
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSD-TPGSMTAPRGP 106
G PG PG+ E +P P GP PA D PGS P GP
Sbjct: 126 GAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGP 182
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PGIPG N +G + P P GP+ I P
Sbjct: 147 GQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGP 181
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Frame = -2
Query: 282 EEVGGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPL 103
E+V G P + T G GR RTP A PR+ +P + +R + A P
Sbjct: 248 EDVKTRGSPVKKTR--GTGRS--RTPEAILNPRKQRTP-VNHHKRSKSQETKLVAMPSPN 302
Query: 102 SATY---GRARWKSSKTPPQTHPRHAECASGARPGP 4
S Y RAR + P P E A A P
Sbjct: 303 SMAYYNTSRARNAGLRPAPSAPPLSPEPAIAAVKTP 338
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Frame = -2
Query: 282 EEVGGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPL 103
E+V G P + T G GR RTP A PR+ +P + +R + A P
Sbjct: 248 EDVKTRGSPVKKTR--GTGRS--RTPEAILNPRKQRTP-VNHHKRSKSQETKLVAMPSPN 302
Query: 102 SATY---GRARWKSSKTPPQTHPRHAECASGARPGP 4
S Y RAR + P P E A A P
Sbjct: 303 SMAYYNTSRARNAGLRPAPSAPPLSPEPAIAAVKTP 338
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -1
Query: 535 LPPAIRPVAGR-QNLGLGEN--KERKKWKI*QNLT*KCNQQYKSEDSKQTKHKEQNNNED 365
LPP+ +PV + + L L E K++KK K + K + KS+ K+TK K +++ D
Sbjct: 740 LPPSSKPVLSKTEVLKLLEKNMKKKKKDKKEKEKKKKSKKSKKSKKEKKTKRKHSSSSAD 799
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PG+PGR+ L +G P PP GP+ + P
Sbjct: 1410 GLPGLPGRDGLPGADG---PVGPPGPSGPQNLVEP 1441
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PG+PGR+ L +G P PP GP+ + P
Sbjct: 1409 GLPGLPGRDGLPGADG---PVGPPGPSGPQNLVEP 1440
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = -2
Query: 204 PAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTHPRHAECA 25
PA + S SPA + TP S +A + SAT GR K+ KTP +T P A
Sbjct: 34 PAKSARKASKSPARARTSNVKKTP-SRSASK---SATRGRTASKTPKTPSKT-PSSASAR 88
Query: 24 SGAR 13
S +R
Sbjct: 89 SRSR 92
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 279 EVGGPGIPGRNTLQLGEGRREPRTPPAGFGP 187
E GGPG PG + GR P PP GP
Sbjct: 221 EPGGPGEPGADGRPGHPGRAGPPGPPGDNGP 251
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 436 KCNQQYKSEDSKQTKHKEQNNNEDKDRQTQHK 341
K ++ K ++ ++ K KE+ ++DKD+ +HK
Sbjct: 1235 KEKEKDKEKEKEEDKGKEKEKHKDKDKDKEHK 1266
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PG+PGR+ L +G P PP GP+ + P
Sbjct: 1409 GLPGLPGRDGLPGADG---PVGPPGPSGPQNLVEP 1440
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PG+PGR+ L +G P PP GP+ + P
Sbjct: 1410 GLPGLPGRDGLPGADG---PVGPPGPSGPQNLVEP 1441
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISP 169
G PG+PGR+ L +G P PP GP+ + P
Sbjct: 1446 GLPGLPGRDGLPGADG---PVGPPGPSGPQNLVEP 1477
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Frame = -2
Query: 279 EVGGPGIPGRNTLQLGEGRREPRTPPAGFG-PRRSISPAITQRE---RRSDTPGSMTAPR 112
E G PG+PG++ G + P+ PP G P S + E P P+
Sbjct: 167 EPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPEHQESQECPRGEPLIPGEPGPPGEAGPQ 226
Query: 111 GPLSATYGRARWKSSKTPPQTHPRHAECASGARPGPG 1
GP + S P P + GA PG
Sbjct: 227 GPPGSPGQPGADGSPGQPGPKGPNGPDGQPGADGNPG 263
>Z81568-2|CAB04590.1| 276|Caenorhabditis elegans Hypothetical
protein K08E3.2 protein.
Length = 276
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 484 ENKERKKWKI*QNLT*KCNQQYKSEDSKQTKHK-EQNNNEDKDRQTQHKLNQK 329
E+KE KK ++ + +++ K+ + K+ K ++N N++KD + K ++K
Sbjct: 87 EDKEEKKDDSKEDKKDEDHEKKKTAEEKENNEKKDENKNKNKDERKDEKKDEK 139
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 784 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 811
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 387 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 414
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 747 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 774
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 259 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 286
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 784 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 811
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 387 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 414
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 747 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 774
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -3
Query: 194 LVHVAQSLPP*HNEREGAIPLGV*LLPEARYPPPTDAPGGSPAKLPHRR 48
L V++++ P +E IPL L E PPP + PGG A PH R
Sbjct: 783 LSRVSENVVP--DETPKLIPLEK-LKKEDPLPPPANRPGGRAALPPHIR 828
>U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical
protein C06A5.3a protein.
Length = 780
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 332 KI*RKQKDSKNKLKIIRKKSGARVSPEETPFN*VKGAESPEPP 204
+I RKQKD ++ IRK +G + +E F ++ P P
Sbjct: 74 EIPRKQKDFNKAVQEIRKAAGLQTDADEINFPTIERKSPPSSP 116
>U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical
protein C06A5.3b protein.
Length = 783
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 332 KI*RKQKDSKNKLKIIRKKSGARVSPEETPFN*VKGAESPEPP 204
+I RKQKD ++ IRK +G + +E F ++ P P
Sbjct: 74 EIPRKQKDFNKAVQEIRKAAGLQTDADEINFPTIERKSPPSSP 116
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 259 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 286
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 387 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 414
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFG 190
G PG PGR+ EG+R P+ PP G
Sbjct: 726 GLPGAPGRDGTSGVEGQRGPQGPPGPKG 753
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTP--PAGFGPRRSISPAITQRERRSDTPGSMTAPRGP 106
G PG PG +G+ EP TP P GP P + D P+GP
Sbjct: 198 GNPGAPGSPGKPGEDGKSEPITPGAPGPAGPPGPQGPPGAPGQPGHDGQPGTPGPKGP 255
>U88172-4|AAB42259.1| 224|Caenorhabditis elegans Hypothetical
protein ZK354.7 protein.
Length = 224
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -1
Query: 427 QQYKSEDSKQTKHKEQNNNEDKDRQTQHKLNQK 329
++ K E+ K+ K KE+ N+E+K+ + + K ++K
Sbjct: 182 KEEKKEEKKEEK-KEEKNDENKEEKKEEKKDEK 213
>U52072-1|AAD11465.1| 97|Caenorhabditis elegans dauer-upregulated
protein 191 protein.
Length = 97
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 358 CPYLRCYFVLCVLFVYYLHSCTVGYIFMLDFVIFSTSFFLYSHPIPSF 501
C + CYF +LFV++ C ++F+ V F SH + F
Sbjct: 50 CSFFFCYFCFVILFVFFSSPC---FLFLPKTVYPIHPFLPSSHCVNRF 94
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRR 220
G PG+PGRN L G+G R
Sbjct: 237 GMPGLPGRNGLTGGQGER 254
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRR 220
G PG+PGRN L G+G R
Sbjct: 274 GMPGLPGRNGLTGGQGER 291
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRR 220
G PG+PGRN L G+G R
Sbjct: 258 GMPGLPGRNGLTGGQGER 275
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = -2
Query: 264 GIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGR 85
G PG+++ + E R PR P G GPR R+ ++ S PRGP +
Sbjct: 362 GGPGKSSEESSESREGPRGGPRG-GPRGG------PRKSSEESSESREEPRGPRRSPPTG 414
Query: 84 ARWKSSKTPPQTHPRHAECASGARP 10
+ + +PP P +G+ P
Sbjct: 415 S--PPTGSPPTGRPPRGSPPTGSPP 437
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = -2
Query: 264 GIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGR 85
G PG+++ + E R PR P G GPR R+ ++ S PRGP +
Sbjct: 383 GGPGKSSEESSESREGPRGGPRG-GPRGG------PRKSSEESSESREEPRGPRRSPPTG 435
Query: 84 ARWKSSKTPPQTHPRHAECASGARP 10
+ + +PP P +G+ P
Sbjct: 436 S--PPTGSPPTGRPPRGSPPTGSPP 458
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = -2
Query: 264 GIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGR 85
G PG+++ + E R PR P G GPR R+ ++ S PRGP +
Sbjct: 368 GGPGKSSEESSESREGPRGGPRG-GPRGG------PRKSSEESSESREEPRGPRRSPPTG 420
Query: 84 ARWKSSKTPPQTHPRHAECASGARP 10
+ + +PP P +G+ P
Sbjct: 421 S--PPTGSPPTGRPPRGSPPTGSPP 443
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 436 KCNQQYKSEDSKQTKHKEQNNNEDKDR-QTQHKLNQK 329
K + KS+ +K+ KE++ +ED++R + +HK ++K
Sbjct: 766 KMKKHKKSKKNKKHHRKEEDGDEDEERKRKKHKKHKK 802
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 129 SQGYRSFSLVVLWRERLSDV-DQNQQGGFWALCALHLVEGCF-FRGY 263
S+ R V WR L + DQ+ GG WA + ++E F +GY
Sbjct: 217 SRKKRDTEPTVDWRPFLKPILDQSTCGGCWAFSMISMIESFFAIQGY 263
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSD-TPGSMTAPRGP 106
G PGIPG G GR+ P GPR + E D P +P GP
Sbjct: 196 GMPGIPGNQGEDAGPGRQGMPGPTGPPGPRGPPGETGDEGEGGPDGIPMEKKSPPGP 252
>U13875-5|AAA21163.1| 739|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
b protein.
Length = 739
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 216 PRTPPAGFGPRRSIS--PAITQRERRSDTPGSMTAPRGPLSATYGRARWKSSKTPPQTHP 43
P PP P S+ P I QR RS + T A+ R ++ K P++HP
Sbjct: 34 PPPPPPSLYPPCSVFKVPYIPQRVYRSI---NSTLYNNQSFASSSRGFYRKQKPIPKSHP 90
Query: 42 RHAE 31
+H E
Sbjct: 91 KHQE 94
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 116 PEARYPPPTDAPGGSPAKLPHRRTHGTQSA 27
P R PP +PG + P RR +GT+SA
Sbjct: 71 PRVRREPPMRSPGRNEVMSPERR-YGTRSA 99
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 279 EVGGPGIPGRNTLQLGEGRREPRTPPAGFGP 187
E G PG PG+N Q G G P P GP
Sbjct: 186 EAGAPGGPGKNG-QRGSGAPGPAGPEGPAGP 215
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 273 GGPGIPGRNTLQLGEGRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSAT 94
GGP PGR + + GF P+R P + + D+P + P G L
Sbjct: 1507 GGPPGPGRG---MPSPMMRGSSMRGGF-PQRGGGPGMGPSQYYHDSPQNRGPPMGGLPPP 1562
Query: 93 YGRAR-WKSSKTPPQ 52
+G W+ PP+
Sbjct: 1563 HGGMNGWRGGPPPPR 1577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,244
Number of Sequences: 27780
Number of extensions: 337125
Number of successful extensions: 1713
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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