Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l02
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.18 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.23 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.71 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   0.94 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -1

Query: 175 LSRHNTTR----EKERYPWEYDCSQRPVIRHLRTRPVEVQQNSPTDAPTARRVRI 23
           +SRH +TR    EK +  W+YD +  P +++ +     + QN+  D P    +R+
Sbjct: 301 MSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAGSKHLLQNTWLD-PEYPMIRV 354


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 228  GRREPRTPPAGFGPRRSISPAITQRERRSDTPGSMTAPRGPLSATYGRARWKSS 67
            GR  P  P     P   +SP+ + R R  D    +T+P  PLS +   +R + S
Sbjct: 1362 GRPVPERPERV--PTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDS 1413


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 448 FVIFSTSFFLYSHPIPSF 501
           F+ + T FF+Y HP  +F
Sbjct: 128 FISYGTLFFIYVHPSATF 145


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 421 YKSEDSKQTKHKEQNNNEDKD 359
           YKS+ S++  +K++ N ED+D
Sbjct: 201 YKSKASEEHGNKKKKNKEDED 221


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 199 WFWSTSLNLSRHNTTREKERYPW 131
           WF  +  N + +NT + K+ Y W
Sbjct: 129 WFQMSINNTNNNNTNKYKDYYIW 151


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 136 GIAPSLSLCYGGRD 177
           G+A  ++ CYGGR+
Sbjct: 258 GVADLIATCYGGRN 271


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 109 PVIRHLRTRPVEVQQNSPTDAPTARRVRIG 20
           PV+++  TR +    N+P +   A +  IG
Sbjct: 451 PVLKNFPTRYIHEPWNAPLNVQRAAKCIIG 480


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 101 PPPTDAPGGSPAKLP 57
           PPP   PG  P++ P
Sbjct: 46  PPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,893
Number of Sequences: 438
Number of extensions: 4913
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)