Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8l01
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   2e-28
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              100   2e-21
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   2e-20
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.077
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.54 
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         31   0.72 
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         29   2.9  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  123 bits (296), Expect = 2e-28
 Identities = 62/119 (52%), Positives = 72/119 (60%)
 Frame = +1

Query: 370 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 549
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 550 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 726
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANA
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANA 125


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 51/103 (49%), Positives = 62/103 (60%)
 Frame = +1

Query: 418 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 597
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 598 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 726
           M Q            +SIYG +FEDENF LKH GAG LSMAN+
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANS 236


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 53/104 (50%), Positives = 60/104 (57%)
 Frame = +1

Query: 415 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 594
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 595 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANA 726
           FM Q            +SIYG +F DENF LKH G G LSMANA
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANA 102


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 59/137 (43%), Positives = 76/137 (55%), Gaps = 18/137 (13%)
 Frame = +1

Query: 370 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 510
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 511 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 675
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 676 NFKLKHYGAGWLSMANA 726
           NFKL+HYGAGWLSMANA
Sbjct: 128 NFKLQHYGAGWLSMANA 144


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 463 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 591
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +1

Query: 463 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 606
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +1

Query: 469 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 582
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 646 SIYGERFEDENFKLKHYGAGWLSMAN 723
           S+YG  FEDE+F + H   G + MAN
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMAN 76


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +1

Query: 646 SIYGERFEDENFKLKHYGAGWLSMAN 723
           SIYG  F DE F+ KH     LSMAN
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMAN 56


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 425 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 324
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,039,652
Number of Sequences: 59808
Number of extensions: 380707
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)