Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8k12
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 31 1.00
SB_16838| Best HMM Match : TolA (HMM E-Value=2) 31 1.3
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 2.3
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 29 4.0
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 4.0
SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 5.3
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 5.3
SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34) 29 5.3
SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09) 28 7.0
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 7.0
SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20) 28 7.0
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 28 7.0
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 28 7.0
SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27) 28 7.0
SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 28 7.0
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 28 7.0
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 7.0
SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.0
SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 7.0
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 9.3
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 9.3
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 9.3
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 28 9.3
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8) 28 9.3
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 31.1 bits (67), Expect = 1.00
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = -1
Query: 672 CCTSPIPPPC--TGRPS*VVWPPRPKRLYPTYQRHRCKIFARTPAANLAQTMPEIYSNRS 499
CC SP PPPC T +P P + L Q+++ K+ A A + P +
Sbjct: 471 CCQSPAPPPCCMTLKPG----PEKEIELQAGGQKYKLKV-KLEKAGQAAPSAPAGLNQAP 525
Query: 498 AGTRPRCLVPTLFATESGGVSWSP 427
+ PT E+ G S +P
Sbjct: 526 TSSPSASTNPTPTTAETAGTSGAP 549
>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
Length = 371
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 86 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQ-HKLGSDRTVQQEQRTDARRRR 253
S N + Q+ QQ+ R YD +QQ + QQQ + + QQEQ+ ++RR
Sbjct: 32 SNNVQLQQQKRQQQQKRTYN-YDIQQQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRR 87
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 122 QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRR 253
QQ+ R + +QQ QQ+ KL + QQ+Q+ ++RR
Sbjct: 56 QQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRRQQQQKRQPQQRR 99
>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQMCGFC 286
Q+ LQQ+ + +Q +PQQQ QQ Q+ +++++ ++QQ G
Sbjct: 112 QQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIGVM 171
Query: 287 SK 292
K
Sbjct: 172 GK 173
>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQMCGFC 286
Q+ LQQ+ + +Q +PQQQ QQ Q+ +++++ ++QQ G
Sbjct: 111 QQQQLQQQQPQQQQQQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIGVM 170
Query: 287 SK 292
K
Sbjct: 171 GK 172
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 98 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD-RTVQQEQRTDARRRRI 256
H H R+ +R R + A+ GH ++ K +D T+++ DAR+ I
Sbjct: 651 HHHHRSKKDRRHRNTKTHHAKHLKGHSARKHRKENNDAETLEEAVEKDARKNDI 704
>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 48 YNTPPPPLRYPSNPATAIFTNAQ 116
YNT PPPL +P++P ++ Q
Sbjct: 58 YNTYPPPLSHPNDPTRGFYSPVQ 80
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 50 QHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQH-KLGSDRTVQQE 226
QHPS E H Q+ N Q+ + QQ H+ QQQH + R QQ+
Sbjct: 1064 QHPSEQ-ETDHEQPAQHDQQQQNTGQQQQHDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122
Query: 227 QRTDARRRRIYLVQQ 271
Q D ++++ + QQ
Sbjct: 1123 QHHDQQQQQHHDQQQ 1137
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 104 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
HQ QQ+ + + + + Q+ H+ QQQ + + QQ+Q+ ++++ +QQ
Sbjct: 294 HQLHQHQQQHQYQQQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQ 349
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 101 IHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
+HQ+ L Q + + +QQ+ H+ Q QH+ + QQ+Q+ ++++ QQ
Sbjct: 290 LHQQHQLHQHQQ---QHQYQQQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQQ 343
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 27 DERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRD-NKMDTSRSN 188
+ERG ++ +PS P TA FTN + V P +R+ N++ SRS+
Sbjct: 511 EERGYGHFIKTRTGDPHPSYPLTASFTNYPLLSTLDPLVAPLSRELNQLPASRSH 565
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 60 PPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNS 200
PP R+PS P+ NA + +N P Y P D+ D S + +S
Sbjct: 550 PPEYRFPSEEPSPYAEENAISRSNPPVYTPKEEDDDDDDDEESETEDS 597
>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQMCGFC 286
Q+ QQ+ + + +QQ + QQQ + + QQ+Q+ +++R QQ F
Sbjct: 39 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQQQQQQQQQQQQQQRQQQQQQNGSFT 98
Query: 287 SKN 295
+N
Sbjct: 99 KRN 101
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +2
Query: 98 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
H QR ++ + A +QQ + QQQ + + QQ+Q+ ++++ QQ
Sbjct: 112 HDDQRTEYDEKTNILAPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 169
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 86 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARR 247
S N H+ R ++++R+R +A + +P+++ +L R + ++T RR
Sbjct: 3012 SRNDHVQSRFGAREKSRIRRGIEAILRGRTKPRRRRRLNKSRR-RTHKKTTLRR 3064
>SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)
Length = 273
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRI 256
Q+ QQ+ + + +QQ + QQQ + + Q +QRTD ++ I
Sbjct: 31 QQQQKQQQQQQQQQQKQQQQKQQQQQQQQQQQQQQQQQHQQRTDKKQTEI 80
>SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09)
Length = 772
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)
Length = 753
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/58 (22%), Positives = 33/58 (56%)
Frame = +2
Query: 101 IHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQM 274
+ +++ +Q++ V +R+ +G + ++ S RTVQ+E+R + ++ L Q++
Sbjct: 619 LSRKSAIQRKTPVLRVSSSRR-SGSQRGNSSRIASARTVQEEERAKVHQAKLQLKQKL 675
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 319
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 126 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 161
>SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 374
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 361
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27)
Length = 510
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 317
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 272
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 281
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 176
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 430 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 465
>SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 519
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 471
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 160 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 195
>SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 606
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
Q+ QQR + R RQQ H QQQ + + QQ+Q+ R++ L QQ
Sbjct: 253 QQQQQQQRLQQRRQLRERQQR-HLQQQQQRQQQFQRQQQQQQMQQRQQLQQLQQQ 306
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 499
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 77 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 112
>SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 292
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 80 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 115
>SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 635 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 670
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 377
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 78 PSNPATAIFTNA-QTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSK 230
P++ T F N+ + N + P + RDN +DTS ++ + + NK++
Sbjct: 132 PNDNNTLSFDNSFNPFRNKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTR 183
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +3
Query: 54 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 233
+P P PS+P+ + + + + +PGY P + S S S S + +P + S
Sbjct: 413 SPSSPAFMPSSPSMSPASPSYS-PTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYS 471
Query: 234 PT 239
PT
Sbjct: 472 PT 473
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 107 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRIYLVQQ 271
Q+ QQ+ + + +QQ +PQQQ + ++ QQ+Q+ ++++ QQ
Sbjct: 20 QQQQQQQQQQQQQQQQQQQQQQPQPQQQQQQQQEQEQQQQQQQQQQQQQQQQQQQ 74
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 381 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 494
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 6 VQIKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 185
V+ K + E+ + +P P +R S I+T + T + Y + R +++ TS+
Sbjct: 209 VEEKIESSEKFSEKSESPEPSVRVDSETGDEIYTVSATPSETESYATTSMR-SRVSTSKG 267
Query: 186 NSTNSVA 206
+S+ SV+
Sbjct: 268 SSSPSVS 274
>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
Length = 279
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 63 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 224
PP + +P + N +++ P Y PP D + T RS S +V A Y +
Sbjct: 144 PPSSHSRSPNSPGSPNPTLFSH-PSYYPPPPLDFQAGTKRSASCMAVVEADYGR 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,560,283
Number of Sequences: 59808
Number of extensions: 515289
Number of successful extensions: 2351
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -