Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8k10
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   5e-07
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.75 
SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    30   2.3  
SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)                    30   2.3  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49225| Best HMM Match : Vicilin_N (HMM E-Value=9.1)                 29   4.0  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               29   4.0  
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)                 29   5.3  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   5.3  
SB_33316| Best HMM Match : DUF329 (HMM E-Value=7.6)                    29   5.3  
SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)                  29   5.3  
SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)                    28   7.0  
SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        28   9.2  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_17025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +1

Query: 493 VMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSM 672
           ++ ++T  PG+F+ L   LV ++ + +N++     +   I+ QSI E+NF Y GARLC  
Sbjct: 66  ILDQLTESPGEFENLVEDLVLAWKARVNNDETLNEIASVIMEQSILESNFTYTGARLCDF 125

Query: 673 YDSVAQ---PEESVFRECLLERCSVE 741
             +       E   FR   L RC  E
Sbjct: 126 IANNTDDIPTEGKQFRSVFLTRCKEE 151


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 280 DAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 423
           D K W+P +  +   P   TEP+ ++P R    G+   AQ  NP N D
Sbjct: 606 DNKAWHPYHGHTVRAPV-ETEPSYHQPPRGQTNGQATNAQRANPINGD 652


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 26/104 (25%), Positives = 45/104 (43%)
 Frame = +1

Query: 148 NGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALP 327
           NG ++  +   RG + NN+    RRP+ +++E +V   +  L    ++      TS    
Sbjct: 282 NGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSY--- 338

Query: 328 AYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 459
                   YR S   +   +R  Q  + Y LDD   + +EAE +
Sbjct: 339 -------EYRLSGEQI---VRNKQKDSEYELDDEQRARKEAEKL 372


>SB_13703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1358

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/120 (20%), Positives = 50/120 (41%)
 Frame = +1

Query: 340 EPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMDLRENIANLITVMCEITFDP 519
           E  P+R  R  ++ RL  A+DQ      +   ++++       E +   +    E+    
Sbjct: 76  EIQPFREMRLEIKKRLENARDQEKEEEMEKELAMKKKVERRFIEQMYGTVDKQVELY--- 132

Query: 520 GKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQPEE 699
            K   L   ++DSF   L+  +  +P++  + N  I E   +YN  R  +  D  +  ++
Sbjct: 133 -KIQ-LGSTVLDSFRMELHCINAEKPIITHLPNPRIPELKKKYNKLRRLTFSDETSTEDK 190


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 512 LTRASLTPCV-VPWW--IHLLQHLMMKAIPDPWWMPLLISQSAKQISGTMELVCVQCTIQ 682
           +++AS  P   +PW+  + LL H  +  +   W M    +++   I+  +E+    C I 
Sbjct: 125 ISKASADPSKPLPWFDKVRLLMHGRLHLVVKEWLMYFSATRNPYDITERLEVDWTNCDIL 184

Query: 683 WRNLR 697
           W N R
Sbjct: 185 WTNGR 189


>SB_2144| Best HMM Match : MACPF (HMM E-Value=0.007)
          Length = 434

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -1

Query: 469 PVDPCFQLLQVNKTCHPNCMDFDLELDEVYLVQRGEMVYMGQVQCC 332
           P DPC+   +  K C      +D+++  +Y+      + +G    C
Sbjct: 137 PGDPCYTAKETTKQCRQYLSVYDIDVSRIYVNYHNHFIMLGFCYRC 182


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = +1

Query: 190 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAK---EWYPANYTSQALPAYNTEPAPYRP 360
           Q  N    LR+PK +     V ++KS L           P +  S + P     P P RP
Sbjct: 169 QPTNPIPSLRQPKNIPLSTSVTSAKSSLDHCTSFQINMLPEHACSSSHPLTRPIPKPQRP 228

Query: 361 SRPSVQG 381
            +PS  G
Sbjct: 229 PQPSKSG 235


>SB_49225| Best HMM Match : Vicilin_N (HMM E-Value=9.1)
          Length = 121

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/93 (25%), Positives = 40/93 (43%)
 Frame = +1

Query: 181 RGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRP 360
           RG + NN+    RRP+ +++E +V   +  L    ++      TS            YR 
Sbjct: 17  RGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQTSY----------EYRL 66

Query: 361 SRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 459
           S   +   +R  Q  + Y LDD   + +EAE +
Sbjct: 67  SGEQI---VRNKQKDSEYELDDEQRARKEAEKL 96


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 2/148 (1%)
 Frame = +1

Query: 244  PKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 423
            P   +  S LS   +E     +  +     + EP P  PS  S + +   A+D  P  +D
Sbjct: 973  PPCVSQSSSLSVPVQEPIVDGHDVEVSSLLSKEPLPQSPSISSSEHKCGVAEDAAPTLVD 1032

Query: 424  DMSYSLEEAENMDLRENI--ANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRP 597
                S      M    +    +      +  F P K  +   P  DS +++  ++S   P
Sbjct: 1033 SNPCSSRSPIRMPASPSSRGGSAPLPSFDAMFSPTKQKSF-PPAPDSNSTSPKEKSKRSP 1091

Query: 598  LVDAIVNQSIGEANFRYNGARLCSMYDS 681
            +  A   +    AN +    RL   YDS
Sbjct: 1092 VTKASKPRGKKVANKKQGALRLLMQYDS 1119


>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/106 (23%), Positives = 46/106 (43%)
 Frame = +1

Query: 142 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 321
           ++ GD    +   RG + NN+    RRP+ +++E +    +  L    K+      TS  
Sbjct: 4   ISRGDKRVKEDPRRGEEHNNEEERSRRPRVLTEEQRARQRQRDLVLTEKQKVRKRQTS-- 61

Query: 322 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENM 459
                   + YR S    + R+R+ Q  + Y L+D   + +EA  +
Sbjct: 62  --------SEYRLSG---EQRVRKKQKDSEYELNDEQRARKEAAKL 96


>SB_49671| Best HMM Match : Involucrin2 (HMM E-Value=7)
          Length = 145

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/107 (22%), Positives = 46/107 (42%)
 Frame = +1

Query: 142 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 321
           ++ GD    +   RG + NN+    RRP+ +++E +    +  L    ++      TS  
Sbjct: 4   LSRGDKRVEEEPRRGEERNNEKERSRRPRVLTEEQRARQRQRDLVLTEEQRVRKRQTS-- 61

Query: 322 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 462
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 62  --------SEYRLSG---KQRVRKKQKDSEYELDDEQRARKRQRNLE 97


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 265 SKLSADAKEWYPANYTSQALP--AYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLD 423
           SK S   KEW   +  ++++P   Y  E   Y+ S   + G +     Q  YNLD
Sbjct: 197 SKFSFKTKEWKYVSTQNESVPFPRYRHEAVDYKGSFYVIGGGMGSTDPQEFYNLD 251


>SB_33316| Best HMM Match : DUF329 (HMM E-Value=7.6)
          Length = 102

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/107 (22%), Positives = 45/107 (42%)
 Frame = +1

Query: 142 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 321
           ++ GD    +   RG + NN+    RRP+ +++E +       L    ++      TS  
Sbjct: 4   LSRGDKRVEEEPRRGEERNNEEERSRRPRVLTEEQRARKRARDLVLTEEQRVRKRQTS-- 61

Query: 322 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 462
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 62  --------SEYRLSG---EQRVRKGQKDSEYELDDEQRARKRQRNLE 97


>SB_30672| Best HMM Match : Colipase (HMM E-Value=6.5)
          Length = 305

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 569 HLMMKAIPDPWWMPLLISQSAKQISGTMELVCVQCT-IQWRNLRSLYSASAC 721
           H+M +   + WW P + S++    +G +E+ C Q T I   +  ++Y ++ C
Sbjct: 90  HIMRR---ESWWHPCVKSKAVNPGTGELEVTCYQTTSIGCYHNLAIYGSTRC 138


>SB_5724| Best HMM Match : Vicilin_N (HMM E-Value=3)
          Length = 861

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 25/107 (23%), Positives = 47/107 (43%)
 Frame = +1

Query: 142 MNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQA 321
           ++ GD    + R RG + NN+    RRP+ +++E +    +  L    ++      TS  
Sbjct: 4   LSRGDKRVEEPR-RGEEQNNEDERSRRPRVLTEEQRARQRQRDLVLTEEQRVRKRQTS-- 60

Query: 322 LPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 462
                   + YR S    + R+R+ Q  + Y LDD   + +   N++
Sbjct: 61  --------SEYRLSG---KQRVRKGQKDSEYELDDEQRARKRQRNLE 96


>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 139 KMNNGDISAPKGRGRGWQMNNQARELRRPKAVSDEPKVDTSKS 267
           K     I   KGRGRG  +  +A+E++ P       KVD +K+
Sbjct: 439 KQTESGIHFGKGRGRGSALREKAKEIKNPG--EKLQKVDVTKT 479


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 217 RRPKAVSDEPKVDTSKSK----LSADAKEWYPANY 309
           R+P+A+S +PK+ TS S+    +S +   W P  Y
Sbjct: 316 RKPRAISWQPKLATSASRTPTVVSKEVAVWNPVEY 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,976,614
Number of Sequences: 59808
Number of extensions: 569750
Number of successful extensions: 1467
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)