Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8k05
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                   144   9e-35
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  31   0.74 
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 30   2.3  
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   3.0  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   3.0  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)               29   3.9  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   5.2  
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)                    28   6.9  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)             28   6.9  
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)            28   6.9  
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)                       28   9.1  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     28   9.1  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   9.1  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score =  144 bits (348), Expect = 9e-35
 Identities = 74/147 (50%), Positives = 99/147 (67%), Gaps = 6/147 (4%)
 Frame = +1

Query: 163 EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGL 333
           EKEK+ P GFRDA++ GL      G DL+   K+LD++G KL+YR YGE +FDVL A   
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA-- 59

Query: 334 LLPGGSVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKK 504
             PGGS+  DG +P   KTN CIF AN D +T+R   Q+  KL+ RY+YL+K +E+EM K
Sbjct: 60  --PGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNK 117

Query: 505 VLVYLKGFDPEQRIKLARMTALWIGNG 585
           +L++LKGF  E+R KLA  T + + NG
Sbjct: 118 ILLFLKGFTDEEREKLAFTTGVVLANG 144


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 595 EARIRYRSTVQSCAPA*CAVRDRSLSSRPEPFSFPLRTFFPSTCT---DASVSRIPVRNF 425
           E   R  + + S  P  C  + RS+S  P+P+ +P+ T +P   T     +VS+  VR +
Sbjct: 156 EGYCRTDAEINSRCPYSCR-KYRSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGW 214

Query: 424 AW 419
            W
Sbjct: 215 QW 216


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 532 PEQRIKLARMTALWIGNGCVPPSVLLVLVN 621
           PE++ ++ ++  LW  NG  PP V+  L+N
Sbjct: 92  PEEQGRIVKVLNLWQKNGIFPPEVIQPLIN 121


>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 273 KTRLPTLWRSHIRCTHCWRPAAAG 344
           + RLP  WRS  R  H W+P+  G
Sbjct: 19  RDRLPFQWRSRARRNHGWKPSLKG 42


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 140 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 286
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 140 GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 286
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +1

Query: 133 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 222
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_40901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 702 GDAALLLDDREHFQHEVQRQVVLQQMFVHQDQQH 601
           G+ A+  ++ E F+HEV + ++ + M V  ++QH
Sbjct: 36  GETAIEAENEEDFEHEVLKFLLYRNMEVSPEEQH 69


>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
          Length = 114

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 399 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 280
           G  AG G G F  H +R  R+++    EYIE     ASV+
Sbjct: 69  GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 377 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAES 258
           L D+P+  + PP S+ P A ST  M+S       F PA +
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANT 201


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 104 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 226
           V R K +  RV     + + R+R   +     LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600


>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
          Length = 114

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 11  VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492  LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
            +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 449 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 321
           +  + S+ R +++++   ++QV      PSI ++PP    PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165


>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
          Length = 285

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 492 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 385
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167


>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
          Length = 1378

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +3

Query: 342 GRFGVDGRRIAQDQH-----LHLLRQ*GYGHHAKFRTGIRETDASVQV-LGKNVRRGNEK 503
           G  GV  +R  +D +     ++ LRQ       K RT   + D  V + L  N+    E 
Sbjct: 92  GSGGVKRKRDPEDDNGKEDVVYELRQTSTKRSTKMRTDCTDYDLKVDLPLRDNLEEALED 151

Query: 504 GSGLLERLRSRTAHQAGAHD 563
             G+L+R+   T H    HD
Sbjct: 152 VEGVLDRVLDDTLHGVQEHD 171


>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
          Length = 109

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 406 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKV 507
           +DM  MR   Q++ K MRR + L +M  ++M+++
Sbjct: 68  KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 214 LERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTN 384
           L+  G   D   +Y ++     D   +   + DV+  G  L+ GG +S   ES  TN
Sbjct: 543 LDSLGSQGDPTEEYREAKDLIRDILNHKPDVVDVITKGNELIDGGKISSADESEITN 599


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 259 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 116
           L  C + RDR+     P+   R   + HT++  +F W  S V  +I ++
Sbjct: 26  LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,456,693
Number of Sequences: 59808
Number of extensions: 537211
Number of successful extensions: 1835
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)