Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8k05
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ... 29 3.4
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 4.5
AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical ... 29 4.5
AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein. 29 4.5
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr... 28 6.0
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 28 6.0
AC024136-5|AAF35964.4| 257|Caenorhabditis elegans Hypothetical ... 28 6.0
Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical pr... 28 7.9
AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 7.9
>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
protein Y54E10A.11 protein.
Length = 1446
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 403 NEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDPEQRIK-LARMT 564
+EDMDT E +++K +Y+EK+FE + L FD ++ + LA +T
Sbjct: 878 SEDMDT--KIETIYLKTDTPLEYVEKVFEASQSENSFPLFQFDQSKKYEWLANLT 930
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 422 MVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP 294
+VS SS V+ +PS P +S P STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508
>AL032648-6|CAC35867.1| 244|Caenorhabditis elegans Hypothetical
protein Y54G9A.7 protein.
Length = 244
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 424 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFDPEQRIK 549
R +++ F K + R K L E+ F++ MK +L L+ F+PE+ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172
>AF303259-1|AAG50217.1| 244|Caenorhabditis elegans 2O16 protein.
Length = 244
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 424 RNFEQVFVKLMR--RYKYL--EKMFEEEMKKVLVYLKGFDPEQRIK 549
R +++ F K + R K L E+ F++ MK +L L+ F+PE+ +K
Sbjct: 127 RRYDRDFFKYQKYHREKKLKSEREFQKRMKSLLTELEAFNPEKYVK 172
>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
protein T13H2.5b protein.
Length = 1092
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 690 LLLDDREHFQHEVQRQVVLQQMFVHQDQQ 604
L L ++ QH++Q+Q+ +QQ HQ QQ
Sbjct: 832 LQLQQQQLMQHQLQQQLQMQQHQQHQQQQ 860
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
T13H2.5a protein.
Length = 2471
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 690 LLLDDREHFQHEVQRQVVLQQMFVHQDQQ 604
L L ++ QH++Q+Q+ +QQ HQ QQ
Sbjct: 2211 LQLQQQQLMQHQLQQQLQMQQHQQHQQQQ 2239
>AC024136-5|AAF35964.4| 257|Caenorhabditis elegans Hypothetical
protein F54A3.2 protein.
Length = 257
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 585 SVTDPQCSHARQLDAL--FGIEAFQVDQNLFHFLFEHFFQVLVPTHQF 448
+V D S Q D + FGI + + + L HFL+ +F + P QF
Sbjct: 170 AVADTTTSERLQKDLIDWFGIPSPESKKTLLHFLYAYFCRQCTPDIQF 217
>Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 409 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARM-TALWIGN 582
DM ++++ +++ + + R ++L + F +EM + + +DP+QR + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337
>Z74043-7|CAA98539.2| 705|Caenorhabditis elegans Hypothetical
protein T19B10.5 protein.
Length = 705
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 134 VNGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAK 301
V+ S +KEMR + R+ + T V P+ + PTS T P + ++TD+ K
Sbjct: 324 VSDSDDDKEMRYHPLFRSNTLT---HVHFNPLGTISTPTSIATTPQRCTSTDSKQK 376
>AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/60 (21%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 409 DMDTMRNFEQVFVKLMRR-YKYLEKMFEEEMKKVLVYLKGFDPEQRIKLARM-TALWIGN 582
DM ++++ +++ + + R ++L + F +EM + + +DP+QR + + ++ W+G+
Sbjct: 278 DMISLKDDQKMGLDISHRPQEHLTRRFSKEMHEFIANCLDYDPQQRGSASDLKSSAWLGS 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,639
Number of Sequences: 27780
Number of extensions: 397574
Number of successful extensions: 1579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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