Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8k03
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)                29   3.0  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   29   3.9  
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   6.8  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       28   9.0  
SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)                    28   9.0  
SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)                      28   9.0  
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   9.0  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_14315| Best HMM Match : ROF (HMM E-Value=7.4)                       28   9.0  
SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9)                    28   9.0  

>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +1

Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 663
           GV+EEL  KL+   E L ++N+++   +  + + NA +      L + R     L +R+ 
Sbjct: 799 GVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLRENLEDERTVVQNLEDRIG 858

Query: 664 DIAQ 675
            + Q
Sbjct: 859 GLIQ 862


>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = -3

Query: 473 SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
           SI+     LP  S  G+         +    S  F+   I    + ST C  R S   C 
Sbjct: 107 SIINESVNLPRRSMSGLLLLFVEPYTAGDRDSEKFVYPDIKSVRLQSTACQTRSSARDCA 166

Query: 293 TTLSGAGVYGIDPDSLY 243
             +SG    G+ P+S Y
Sbjct: 167 PRISGGRRKGVSPESFY 183


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 79  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 240
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_27931| Best HMM Match : Filament (HMM E-Value=0.028)
          Length = 428

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +1

Query: 463 VKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETA 642
           +  DT    I+ L KKL+   + L   NE+ +   +A+      L +A+   NE + +  
Sbjct: 124 IPKDTYDREIKALEKKLSRCKQELENNNERRLEAESAVQRLKNSLDKASNFSNETKVKVE 183

Query: 643 QLANRMADIAQDV 681
           +L N    +++ V
Sbjct: 184 ELKNDKQKLSKKV 196


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +1

Query: 469  MDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQL 648
            +DT+  V+EE  +K+    + L E+ +++     +L   +  L + +  L E+R+E   +
Sbjct: 954  LDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSLKEKDGKLAELDQALKESRKE---I 1010

Query: 649  ANRMADIAQ 675
             NR A ++Q
Sbjct: 1011 KNREAQVSQ 1019


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = -3

Query: 473  SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
            SI+     LP  S   +         + A  S  F+   I    V ST C  R S   C 
Sbjct: 969  SIINESVNLPRRSMSSLLLLFVEPYTAGARDSEKFVYPDIKSVRVQSTACQTRSSARGCA 1028

Query: 293  TTLSGAGVYGIDPDSLY 243
              +SG    G+ P+  Y
Sbjct: 1029 PRISGGRRKGVSPELFY 1045


>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G+ G+
Sbjct: 336 ECIGHVQKRVGDSLRKLKRDTPGLGSKGK 364


>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G+ G+
Sbjct: 347 ECIGHVQKRVGDSLRKLKRDTPGLGSKGK 375


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 91   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 252
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +1

Query: 490  IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADI 669
            +EE NKKL  + ES+     +++       T N GL +   ++++   +   L       
Sbjct: 1088 LEEANKKLVRSRESIMSLESQVVEGRKINETLNKGLEKKEKIIDDLNYQIKMLRKNFDAN 1147

Query: 670  AQDVIA 687
             Q++I+
Sbjct: 1148 NQELIS 1153


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 663
           G +EEL + L    E   + NE+I    +A     A     +T + E   E   L +R+ 
Sbjct: 673 GRVEELEEMLEAEREKQHKKNEEISSDEDAEQARQALEETMHTTIEELHEEVETLRSRLQ 732

Query: 664 DIAQ 675
           D+ Q
Sbjct: 733 DVGQ 736


>SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)
          Length = 257

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G  G+
Sbjct: 146 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174


>SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)
          Length = 393

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G  G+
Sbjct: 146 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 174


>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 304 DPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNY 483
           D + +     L+T+   I L ++  + +AV    WL  ++   +L  GKY P+     N+
Sbjct: 115 DAMSIDTAASLLTRSQWISLNIQIVVYFAV----WLTFQLFDAILIPGKYMPSGSYQVNW 170

Query: 484 GVIE 495
            +IE
Sbjct: 171 LIIE 174


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G  G+
Sbjct: 535 ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 563


>SB_14315| Best HMM Match : ROF (HMM E-Value=7.4)
          Length = 239

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +1

Query: 508 KLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMADIAQDVIA 687
           +LA  S  +   N   + +    +     L++ + M +++    A +ANRM  +    + 
Sbjct: 21  QLASLSGPVFTDNGSRVQYLTHFLQGYVALIEGSHMNSQSALGLATIANRMVFVFSGNVL 80

Query: 688 KPNNPQLLHS 717
               PQLLHS
Sbjct: 81  ASLPPQLLHS 90


>SB_13996| Best HMM Match : MOSP_C (HMM E-Value=6.9)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 567 QCVGDRQRRIGAS*HNVKRGAPRNGAAGQ 653
           +C+G  Q+R+G S   +KR  P  G  G+
Sbjct: 66  ECIGHVQKRVGNSLRKLKRDTPGLGGKGK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,680,268
Number of Sequences: 59808
Number of extensions: 474999
Number of successful extensions: 1288
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)