Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j21
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    26   0.25 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       25   0.44 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.1  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 519 HGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
           +G  +DI + S RC C DGY   Y   TE   C
Sbjct: 158 NGTCEDIGN-SHRCHCSDGYSGSY-CQTEINEC 188


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 495 NVPVGCAPHGRIDDINSASIRCVCDDGYVSDY 590
           + P  C  HG   ++     RC C  G+   Y
Sbjct: 33  SAPSICGEHGHCVNLPGVGHRCQCQPGFTGKY 64


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 461  SGP*ATAQKSETSFSFGQQPHTR 393
            SGP +T  KS     F + PH++
Sbjct: 1118 SGPGSTGSKSPPVAGFEESPHSK 1140


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 183 HECHKTLTPCSTHS 224
           H CH  L  C T S
Sbjct: 347 HRCHGNLQSCPTRS 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,709
Number of Sequences: 336
Number of extensions: 3424
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)