Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8j21
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 32 0.50
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 31 1.1
SB_17371| Best HMM Match : EGF_CA (HMM E-Value=0.36) 30 2.0
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 2.7
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42) 29 3.5
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 3.5
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29) 29 4.6
SB_43225| Best HMM Match : DUF266 (HMM E-Value=5) 29 4.6
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 6.1
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 28 8.1
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 28 8.1
SB_2045| Best HMM Match : EGF (HMM E-Value=0) 28 8.1
>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 35.1 bits (77), Expect = 0.053
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 486 EDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
++C + P+GR D+ S RCVC+DGY+ D +
Sbjct: 260 DECRMDANACPNGRCIDMPSG-FRCVCNDGYILPTGRDNK 298
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +3
Query: 405 LLAETETGFALLCSCLRPG--LVTQLNMYEDCNVPVG----CAPHGRIDDINSASIRCVC 566
++A+T++G+ LC+ PG L + ++ D + CAP G + S C C
Sbjct: 482 VVADTDSGYQCLCN---PGYHLDSDPHICSDIDECTSGSHTCAPSGGVCTNTMGSYTCAC 538
Query: 567 DDGYVSDYNADTETPYC 617
D GY D T+ C
Sbjct: 539 DSGYTGDGQICTDIDEC 555
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 492 CNVPVGCAPHGRIDDINSASIRCVCDDGYVSD-YNADTETPYCRPRTVR 635
C+ CAP G + + S C C+ G++ D YN T + + VR
Sbjct: 847 CSAENSCAPIGSSCTLTNDSYTCACNSGFLGDGYNCTVVTRKGKAQGVR 895
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 486 EDCNVPVG-CAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
++C+V CAP G N S C C GY D + T+ C
Sbjct: 764 DECSVGSHTCAPSGSTCTNNVGSYVCTCSTGYSGDGDTCTDIDEC 808
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C HG +I RC CD+GY ++
Sbjct: 957 CGAHGTCINIQGGDFRCACDEGYTGNH 983
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +3
Query: 456 PGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
PG V++ C C G ID+ S +C CDD YV + + P
Sbjct: 356 PG-VSRCRYKHQCPAHAHCVESG-IDEHAGTSYKCACDDEYVDSFGKEVFDP 405
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 459 GLVTQLNMYEDCNV-PVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRPRTVR 635
G +T+ +C+ P C P GR + S RC+CD G+ S YN T R
Sbjct: 74 GKITRCVDVNECDENPNFCRPGGRCVN-TPGSYRCLCDPGFQS-YNGGTVCVDSREDFCF 131
Query: 636 DVMHDES 656
DV +E+
Sbjct: 132 DVFDNEN 138
>SB_17371| Best HMM Match : EGF_CA (HMM E-Value=0.36)
Length = 38
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 516 PHGRIDDINSASIRCVCDDGYVSDYNADTE 605
P+GR D+ S RCVC+DGY+ D +
Sbjct: 7 PNGRCIDMPSG-FRCVCNDGYILPTGRDNK 35
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 334 ARISFSCSWPSSPRILTIVSSSNNWQLANPSRHRLQS-LCVEHGVKVL*HSC 182
A I + P++PR++ + S W+ + PSR L S L H ++ SC
Sbjct: 2467 ADIKLEATPPATPRLIRVQESPRPWKRSAPSRQVLSSPLFSRHNIRDDLESC 2518
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +3
Query: 375 RSCNPNTGVWLLAETETGFALLCSCLRPGLVTQ--LNMYEDCNVPVGCAPHGRIDD--IN 542
R+C N G TE ++CSC PG + N ED N C G IN
Sbjct: 3369 RTCAVNNGGCSQNCTERDSHVICSCW-PGFELKPFTNKCEDVNE---CLHFGVCSQRCIN 3424
Query: 543 S-ASIRCVCDDGYV 581
+ S +CVC +GYV
Sbjct: 3425 TRGSFKCVCHEGYV 3438
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Frame = +3
Query: 456 PGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYV------SDYNADTETPY 614
P +T + ++C + V P N S C C GY +D N TETPY
Sbjct: 924 PANLTSCDDIDECGLGVATCPASADCVNNDGSYTCRCKRGYTLVNKTCTDVNECTETPY 982
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGY 578
+C+ G HG + N S +C+CD GY
Sbjct: 3358 ECDASPGPCVHGECSN-NYGSFKCICDKGY 3386
>SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)
Length = 240
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 447 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGY 578
C++ G + + + C P C HGR ++N +C CD GY
Sbjct: 192 CIQEGTESYQCVKKMCE-PNPCQ-HGRCIEVNDDDYQCACDAGY 233
>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -1
Query: 173 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYNSKMH 9
+D + +H RV + +++ H++ +HIY +IRVH + H + YN+
Sbjct: 82 YDKHIRVHIYNKHIRVHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYDKHIRVHIYNNTYV 141
Query: 8 FT 3
+T
Sbjct: 142 YT 143
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -1
Query: 173 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 21
+D + ++H RV + +++ H++ VHIY +IR+H + H + YN
Sbjct: 37 YDKHMRVHIYDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYN 92
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -1
Query: 173 FDYYFGRRFNERHARV-VKNRNRITHLF----MVHIYQVYIRVHYCNNH*KKQQYN 21
+D + ++H R+ + +++ H++ +HIY +IRVH N H + Y+
Sbjct: 46 YDKHMRVHIYDKHIRIHIYDKHIRVHIYDKHIRIHIYDKHIRVHIYNKHIRVHIYD 101
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 447 CLRPGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGY 578
C++ G + + + C P C HGR ++N +C CD GY
Sbjct: 151 CIQEGTESYQCVKKMCE-PNPCQ-HGRCIEVNDDDYQCACDAGY 192
>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
Length = 214
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 177 NTHECHKTLTPCSTHSDC 230
N +EC++T +PCS H C
Sbjct: 84 NVNECNETQSPCSEHGAC 101
>SB_43225| Best HMM Match : DUF266 (HMM E-Value=5)
Length = 154
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 539 DIVDTAVRRAAHGHVAIFVHVKLRNKSGP*ATAQKSETSFSFGQQPHTRVGVTRSGAFSI 360
D+V R AA V + V+L +G T ++ S G+Q H++VG S+
Sbjct: 42 DVVQEEARLAAKVQVKRHIRVRLWATTGVEYTMKEGRLSSFLGRQNHSKVGTYDQNLLSV 101
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 177 NTHECHKTLTPCSTHSDC 230
N +EC++T +PCS H C
Sbjct: 663 NVNECNETQSPCSEHGAC 680
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 460 DLLRSLTCTKIATCPWA-ARLTAVSTISTALRSG 558
D+L SLTC I TC A +RL T+S LR+G
Sbjct: 289 DVLLSLTCRHI-TCSIALSRLITTCTVSDTLRNG 321
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDY 590
DC P C +G+ +I +C+C DGY D+
Sbjct: 656 DCK-PGACRNNGKCVEI-PGGFQCLCSDGYEGDF 687
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 261 GSWLILRGTDCNRCVWSTASKFCDIRVY 178
G WL+ + T C VW A ++ RVY
Sbjct: 518 GEWLLRKATSCEHEVWYQALRWRGERVY 545
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 379 RVTPTRVCGCWPKLKLVSLF--CAVAYGPDLLRSLTCTKIATCP 504
R +PT C CW K K +L VA L R ++ T + T P
Sbjct: 568 RTSPTAYCDCWEKCKCRALIPGSQVARSQLLSRLISDTDLVTRP 611
>SB_2045| Best HMM Match : EGF (HMM E-Value=0)
Length = 1101
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 486 EDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYCRPRTVR 635
++C+ P C G+ N+AS C C GY +TE C +V+
Sbjct: 874 DECD-PNPCLRGGQCHQTNNASYICTCPVGYTGQ-KCETEINECLSSSVK 921
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,680,848
Number of Sequences: 59808
Number of extensions: 476474
Number of successful extensions: 1490
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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