Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j13
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27148| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_57718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)                 29   2.5  
SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_16616| Best HMM Match : Phage_integrase (HMM E-Value=0.16)          28   7.7  

>SB_27148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 3   RHYLSSNLYNSGVPLQKVAKLMNHESSASTKHY 101
           RH  + ++  +G+PL+ +  LM H+S +ST+ Y
Sbjct: 49  RHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVY 81


>SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 90  CLRKIRDSLIWPLFVKARRYCISCCS 13
           CLR+ RD+L WP   +  R  +S CS
Sbjct: 596 CLRRARDALFWPGMSQQIRDLVSSCS 621


>SB_57718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 389 FTYNGRADDDNEHEKQYEQIQKD 321
           F+++G +D DN H    EQ+QKD
Sbjct: 16  FSHSGSSDTDNPHRIMAEQLQKD 38


>SB_37971| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-20)
          Length = 466

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
 Frame = -1

Query: 544 FIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFLLIMAGLT 365
           F  LD L  T   +  L     + SS     N+    L L L +S TL ++  L+  GL 
Sbjct: 167 FWALDGLAGTAILAGNLFTCIVLISSPALRKNYMNVFL-LSLAISDTLMAI--LVAPGLA 223

Query: 364 TIMNT--RNNMSRYKKML-----FSFLSYTKLNMVSAPNNKYKFIFIPLLYSLR 224
              +    N M+++  +L      SFL+   LN+++   ++Y  +F PL Y+LR
Sbjct: 224 AFCDRCCENTMTKHCWVLTSVAEISFLAVI-LNLLAICYDRYMAVFKPLHYNLR 276


>SB_51293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 228 NE*SKGIKMNLYLLLGALTIFSLVY 302
           N  + GI MNL+++LGALT+  + Y
Sbjct: 46  NRTAMGIMMNLFIVLGALTLTLIAY 70


>SB_26963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 90  CLRKIRDSLIWPLFVKARRYCISCCS 13
           CLR+ RD+L WP   +  +  +S CS
Sbjct: 252 CLRRARDALFWPGMSQQIKDLVSSCS 277


>SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 368 DDDNEHEKQYEQIQKDAVFLFVI 300
           DDD E   Q    Q DAVFLFV+
Sbjct: 124 DDDFESVSQVGSTQSDAVFLFVV 146


>SB_16616| Best HMM Match : Phage_integrase (HMM E-Value=0.16)
          Length = 201

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 18  SNLYNSGVPLQKVAKLMNHESSASTKHY 101
           S L ++GVP   VA+L  H+S+ S K Y
Sbjct: 119 SRLLDAGVPENFVAQLSGHKSTESLKSY 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,801
Number of Sequences: 59808
Number of extensions: 282473
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)