Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8j08
(259 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 36 0.004
SB_58353| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.34
SB_45312| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 26 5.6
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKA- 79
FNI +YN +N +YN N +YN +N +Y + S N + D+ P NI +
Sbjct: 1153 FNINSVYNPVNINSVYNPFNKDSVYNPVNKDSVYNPVNINSVYNPVNKDSVYNPVNINSV 1212
Query: 78 -NNFNK 64
N FNK
Sbjct: 1213 YNPFNK 1218
Score = 30.3 bits (65), Expect = 0.26
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFS-FCSANVIASDNGTRPCNIKAN 76
FNI +YN +N +YN N +YN +N +Y F+ N + D+ P N K +
Sbjct: 799 FNINSVYNPVNKDIVYNPFNKDIVYNPVNINSVYNPFNKDIVYNPVNKDSVYNPVN-KDS 857
Query: 75 NFNKLLCNVV 46
+N + N V
Sbjct: 858 VYNPVNINSV 867
Score = 29.9 bits (64), Expect = 0.34
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSANVIASDNGTRPCNIKA-- 79
FN +YN +N +YN +N +YN +N +Y F+ DN P NI +
Sbjct: 835 FNKDIVYNPVNKDSVYNPVNKDSVYNPVNINSVYNPFN--------KDNVYNPFNINSVY 886
Query: 78 NNFNK 64
N FNK
Sbjct: 887 NPFNK 891
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
FN +YN +N +YN N +YN +N +Y F+ S N + D+ P N
Sbjct: 926 FNKDSVYNPVNKDSVYNPFNKDSVYNPVNKDSVYNPFNKDSVYNPVNKDSVYNPVN 981
Score = 29.1 bits (62), Expect = 0.60
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLY 151
FNI +YN N +YN +N +YN N +Y
Sbjct: 917 FNINSVYNPFNKDSVYNPVNKDSVYNPFNKDSVY 950
Score = 28.7 bits (61), Expect = 0.79
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 249 NIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFS 139
NI +YN +N +YN +N +YN N +Y F+
Sbjct: 1190 NINSVYNPVNKDSVYNPVNINSVYNPFNKDIVYNPFN 1226
Score = 28.7 bits (61), Expect = 0.79
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDN 106
+YN +N +YN N +YN N +Y F+ S N I DN
Sbjct: 1203 VYNPVNINSVYNPFNKDIVYNPFNKDIVYNPFNINSVYNPIDKDN 1247
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKA--NNFN 67
+YN N +YN N +YN +N +Y F+ S N + D+ P NI + N N
Sbjct: 1140 VYNPFNKDSVYNPFNINSVYNPVNINSVYNPFNKDSVYNPVNKDSVYNPVNINSVYNPVN 1199
Query: 66 K 64
K
Sbjct: 1200 K 1200
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
FN +YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 962 FNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 1017
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKANNFNKL 61
+YN +N+ ++YN +N +YN +N +Y F+ S N + ++ P N K + +N
Sbjct: 741 VYNPVNNDNVYNPVNKGSVYNPVNKGSVYNPFNKDSVYNPVNKNSVYNPFN-KGSVYNPF 799
Query: 60 LCNVV 46
N V
Sbjct: 800 NINSV 804
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKA--NNFN 67
+YN +N +YN +N +YN +N +Y + S N + D+ P N + N FN
Sbjct: 1075 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPFN 1134
Query: 66 K 64
K
Sbjct: 1135 K 1135
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 249 NIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
N +YN N +YN N +YN +N +Y F+ S N + D+ P N
Sbjct: 909 NKDIVYNPFNINSVYNPFNKDSVYNPVNKDSVYNPFNKDSVYNPVNKDSVYNPFN 963
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLY 151
FN +YN N +YN +N +YN N +Y
Sbjct: 790 FNKGSVYNPFNINSVYNPVNKDIVYNPFNKDIVY 823
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSANV---IASDNGTRPCNIKA 79
+YN +N +YN +N +YN +N +Y F+ S +V D+ P NI +
Sbjct: 1102 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPFNKDSDSVYNPFNKDSVYNPFNINS 1157
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFS-FCSANVIASDNGTRPCNIKA- 79
FN +YN +N +YN N +YN N +Y + N D P NI +
Sbjct: 772 FNKDSVYNPVNKNSVYNPFNKGSVYNPFNINSVYNPVNKDIVYNPFNKDIVYNPVNINSV 831
Query: 78 -NNFNK 64
N FNK
Sbjct: 832 YNPFNK 837
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKA- 79
FN +YN +N +YN N +YN N +Y + S N D+ P N +
Sbjct: 899 FNKDSVYNPVNKDIVYNPFNINSVYNPFNKDSVYNPVNKDSVYNPFNKDSVYNPVNKDSV 958
Query: 78 -NNFNK 64
N FNK
Sbjct: 959 YNPFNK 964
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
+YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 994 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 1044
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
+YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 1021 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 1071
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
+YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 1048 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 1098
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLY 151
FN +YN N +YN +N +YN N +Y
Sbjct: 1144 FNKDSVYNPFNINSVYNPVNINSVYNPFNKDSVY 1177
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LN 166
FNI +YN ++ ++YN + + YN +N
Sbjct: 1234 FNINSVYNPIDKDNVYNSVYKETFYNPIN 1262
>SB_58353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
FN +YN +N +YN +N +YN N +Y F+ S N + D+ P N
Sbjct: 8 FNKDSVYNPVNKDSVYNPVNKDSVYNPFNKDSVYNPFNKDSVYNPVNKDSVYNPVN 63
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKANNFNKL 61
+YN +N +YN +N +YN +N +Y F+ S N + ++ P N K + +N +
Sbjct: 148 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPFNKDSVYNPVNINSVYNPFN-KDSVYNPV 206
Query: 60 LCNVV 46
N+V
Sbjct: 207 NINIV 211
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
FN +YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 44 FNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 99
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
FN +YN N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 35 FNKDSVYNPFNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 90
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 252 FNIKYMYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFS 139
FN +YN +N +YN N +YN +N +Y F+
Sbjct: 179 FNKDSVYNPVNINSVYNPFNKDSVYNPVNINIVYNPFN 216
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCNIKANNFNKL 61
+YN +N +YN +N +YN +N +Y + S N + D+ P N K + +N +
Sbjct: 130 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPFN-KDSVYNPV 188
Query: 60 LCNVV 46
N V
Sbjct: 189 NINSV 193
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
+YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 76 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 126
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 MYN*LNSKDMYN*LNSKYMYN*LNSIFLYLQFSFCSA-NVIASDNGTRPCN 88
+YN +N +YN +N +YN +N +Y + S N + D+ P N
Sbjct: 103 VYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVNKDSVYNPVN 153
>SB_45312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 138 FCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 37
F +N+ +D G C ++ NN N L V+LS+
Sbjct: 22 FNISNLAINDTGKFYCTLELNNMNTLTEYVILSV 55
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 138 FCSANVIASDNGTRPCNIKANNFNKLLCNVVLSL 37
F +N+ +D G C ++ NN N L V+LS+
Sbjct: 1198 FNISNLAINDTGKFYCTLELNNMNTLTEYVILSV 1231
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,297,373
Number of Sequences: 59808
Number of extensions: 74051
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 16,821,457
effective HSP length: 62
effective length of database: 13,113,361
effective search space used: 301607303
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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