Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j07
         (296 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   1.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   4.9  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    19   8.5  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 109 RIPNICVAHFKKLNCFSLTSNK 44
           R PNIC      L  F  T+N+
Sbjct: 319 RTPNICYKLLSNLGIFPKTTNE 340


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 146 RSCSNRHGLIRKYGLNIC 199
           R C+  HGL+    LNIC
Sbjct: 473 RKCN--HGLVYDLELNIC 488


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 19.4 bits (38), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 55  TSNKLDTPSRW 23
           T NK D PS W
Sbjct: 129 TQNKNDDPSYW 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,386
Number of Sequences: 336
Number of extensions: 1445
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5322850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)