Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j07
         (296 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    87   4e-19
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    26   1.0  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   3.1  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   4.2  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    24   5.5  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   5.5  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   5.5  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   7.3  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   7.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   7.3  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    23   9.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   9.6  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   9.6  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 87.4 bits (207), Expect = 4e-19
 Identities = 36/52 (69%), Positives = 41/52 (78%)
 Frame = +2

Query: 83  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGF 238
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGF 52


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 124 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRVCS*HRIQDAGL 252
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV   +  +DA L
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAML 49


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 1   AFFSFKFAILKVYLICCS 54
           AF SF++A+  VY IC S
Sbjct: 140 AFTSFRYALFLVYYICRS 157


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 100 LVFSPSQIRTRISVMPI 150
           LV+ PSQIR R+S++ +
Sbjct: 26  LVYRPSQIRRRVSLLSL 42


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -1

Query: 290 FYLKVKFIIPTPFSPAS*ILCHEHTL*STVCICSNRTCGLSHACWSRIGMTEILVRIC 117
           F +K  +I P+ +S  + +LCH++   ++    +    G S     R+G+  +L  +C
Sbjct: 433 FIIKFNYIKPSIYSRFTDVLCHDYV--ASGAQLTQTVTGCSQQVARRMGL-PVLPLVC 487


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 144 HDRDPCPYL 118
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 125 GQGSRSCRSCSNRHGLIRKYGLNICRQC 208
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 124 RTRISVMPILLQQAW 168
           +T + V+P LLQQ+W
Sbjct: 73  KTSVKVVPWLLQQSW 87


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 216 SLKHCLHMFKPYLRIKP 166
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 52   SLARNNLIS*NGPRKYLVFSPSQIRTRISVMPILLQQAWLNP 177
            SLAR +++   GP K L F    + T   V   L + + ++P
Sbjct: 918  SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 177 RIKPCLLEQDRHDRDPCPYLRG*EYQI 97
           R  P LLE  ++  D CP  +G  YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 106 IPNICVAHFKKLNCFSLTSNKLD 38
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 106 IPNICVAHFKKLNCFSLTSNKLD 38
           +P     +F K+ CF     KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,407
Number of Sequences: 5004
Number of extensions: 23647
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)