Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j07
         (296 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   100   4e-22
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    30   0.26 
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    29   0.60 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    29   0.60 
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   1.0  
U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily ass...    27   1.8  
AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical ...    27   1.8  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   3.2  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   3.2  
AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    26   5.6  
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    26   5.6  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical...    25   7.4  
Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 99.5 bits (237), Expect = 4e-22
 Identities = 39/56 (69%), Positives = 47/56 (83%)
 Frame = +2

Query: 83  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKTLD 250
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFK LD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 166 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 17
           M   A S  PR+  +  +    N     + +LNC S+T ++ ++P+ WRT
Sbjct: 93  MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 143 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFK 241
           CR C  R+   + +G++ICR C   +   +  K
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVK 79


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 143 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFK 241
           CR C  R+   + +G++ICR C   +   +  K
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVK 89


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 142 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRI 237
           M I + + WL+P ++F+H+    Q +   H++
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQV 132


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 142 MPILLQQAWLNPQVRFEHMQTVLQRV 219
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>U97008-7|AAB52313.1|  385|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 293 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 88  AHFKKLNCFSLTSNKLDTPSRWRT 17
           A F +LNC ++T+N+   P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277


>AF016445-6|AAC69053.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.10 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 166 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 17
           M   A S  PR+  +  +    +     + +LNC S+T ++ ++P+ WRT
Sbjct: 93  MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 231
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z81529-7|CAB04292.1|  248|Caenorhabditis elegans Hypothetical
           protein F35E8.9 protein.
          Length = 248

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 166 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 17
           M   A S  PR+  +  +    +     + +LNC S+T+++  +P+ WRT
Sbjct: 93  MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141


>Z35603-2|CAA84674.1|  418|Caenorhabditis elegans Hypothetical
           protein T02C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 161 RHGLIRKYGLNICRQCFREYAHDIGFKT 244
           RH L+     + CR CF+E+ +  G KT
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVKT 389


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 184
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 185 RTCGLSHACWSRIGMTEILVRICEGEN 105
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 136 SVMPILLQQAWLNPQVRFEHMQTV--LQRVCS*HRIQD-AGLNGVGIIN 273
           S M IL  Q W +P + FEH +    L  +   HR+ D   L  V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 136 SVMPILLQQAWLNPQVRFEHMQTV--LQRVCS*HRIQD-AGLNGVGIIN 273
           S M IL  Q W +P + FEH +    L  +   HR+ D   L  V I+N
Sbjct: 131 STMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVN 179


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 176 RKYGLNICRQCFREYAHDIGFKT 244
           R YGL +C  C R +  + GF++
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQS 256


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  IKLFLANEQQIRYTFKMANLNEKK 3
           + +FL  E ++ Y+F + NLNE++
Sbjct: 63  LTIFLEQEVEMAYSFGLENLNEQQ 86


>AL032627-12|CAB63357.1|  577|Caenorhabditis elegans Hypothetical
           protein Y41C4A.9 protein.
          Length = 577

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 40  LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQT 204
           L+C  L    +++ + G   +L+ S +   T +    I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335


>Z71185-3|CAA94905.2|  427|Caenorhabditis elegans Hypothetical
           protein C35A5.4 protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 139 PRSLSVSARVRIPN-ICV-AHFKKLNCFS 59
           PR  SV+A +R+PN +C+  + +  N +S
Sbjct: 113 PRQTSVNAAIRMPNSVCIQVYHRPYNAYS 141


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 57  SEKQFNFLKWATQIFGILTLADTDKDLGH 143
           + ++FNFLKW ++ F  L +      + H
Sbjct: 148 NRERFNFLKWGSKAFDNLLIVPPGSGIVH 176


>AL022716-3|CAA18771.1|  272|Caenorhabditis elegans Hypothetical
           protein C24F3.2 protein.
          Length = 272

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 191 SNRTCGLSHACWSRIGMTEILVRICEGENTKYLR 90
           S  TC +SH C +++G        C G N K++R
Sbjct: 223 SGATCSVSHTCGAKLGTFIASGSKCNGCN-KFVR 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,845,037
Number of Sequences: 27780
Number of extensions: 135624
Number of successful extensions: 356
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)