Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j06
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54002| Best HMM Match : POP1 (HMM E-Value=0)                       155   4e-38
SB_39033| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)                 32   0.38 
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)             31   1.2  
SB_18414| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)             29   3.6  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)                      28   6.2  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
          Length = 886

 Score =  155 bits (375), Expect = 4e-38
 Identities = 73/144 (50%), Positives = 101/144 (70%), Gaps = 2/144 (1%)
 Frame = +1

Query: 259 KFAASRSIEIAAMTESIQRTNHN--KLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQF 432
           +FA +R++E+  M  +++  +    K IFQ  P HMRRR  SH+ KR+P++LRE   K+ 
Sbjct: 45  EFAEARALELREMVRNMKEADGRTRKRIFQAPPKHMRRRAASHDVKRMPVRLREQAAKEM 104

Query: 433 KNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRHKWLETHIWHAKRFHMIEKWGYRLAYA 612
                   QK+ SR+ RR+  NL++EY+RRQ++H WLETHIWHAKR  M+EKWGYRLA  
Sbjct: 105 IPK--TTTQKK-SRRQRRKTSNLMEEYSRRQRQHMWLETHIWHAKRMKMVEKWGYRLAEN 161

Query: 613 PCDKAFRACYRATSAHCLLQDISY 684
           P DK+F+A +RA + +CLLQDISY
Sbjct: 162 PTDKSFKAAHRAVTHNCLLQDISY 185


>SB_39033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = +1

Query: 259 KFAASRSIEIAAMTESIQRTNHN--KLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQ 429
           +FA +R++E+  M  +++  +    K IFQ  P HMRRR  SH+ KR+P++LRE   K+
Sbjct: 45  EFAEARALELREMVRNMKEADGRTRKRIFQAPPKHMRRRAASHDVKRMPVRLREQAAKE 103


>SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)
          Length = 212

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +1

Query: 289 AAMTESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRP 468
           A  TES ++     LI  NL V    R+ S +S++   KL +    ++ NN       RP
Sbjct: 32  AKKTESFEKEEETYLI--NLWVSYHERLESKDSRKYWAKLVDELNNKYNNN-------RP 82

Query: 469 SRKYRRRPQNLLDEYNRRQKRHK 537
             K +RR + L+++Y  R+  +K
Sbjct: 83  VDKCKRRIKYLIEKYKERKDWNK 105


>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
 Frame = +1

Query: 328 KLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLD 507
           K+I        RRR    N  +L  K   A  +QFK N F   +   ++      +   +
Sbjct: 110 KVILGRTENEKRRRERGSNQTQL--KTERAFQRQFKRNSFGDFESYGNQCVSELERQNSE 167

Query: 508 EYNRRQKRHK---WLETHIWHA 564
           E+ + Q   K   WLE   WHA
Sbjct: 168 EHKKWQVELKLALWLELRAWHA 189


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = +1

Query: 295  MTESIQRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSR 474
            M E  +     K +FQ+     RR      ++    +L EA   +       ++ +   R
Sbjct: 1590 MREKEEEMERQKQVFQDTLEQERRLRNDREAEEARRRLEEASRSEEYERQRQLELQEKER 1649

Query: 475  KYRRRPQNLLDEYNRRQKR 531
            + +    NLLD Y R+Q++
Sbjct: 1650 RNKEEEDNLLDAYRRKQEQ 1668


>SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)
          Length = 328

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +1

Query: 412 EAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRHKWLETHIWHAKRFHMIEKW 591
           +A  K  K N    K +R S K  +RP+  +   NR  K  K  + H W  K  + I KW
Sbjct: 132 KAKIKNLKKN--KPKLRRKSSKRLKRPKREMPTTNRSGKWEKRRQMHFW--KELYYIIKW 187


>SB_18414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 559 HAKRFHMIEKWGYRLAYAPCDKAFRACYRATSAHCL 666
           H+      + + YRL  A C    +AC R  SAHCL
Sbjct: 104 HSSMSDTTDNFSYRLVRASCSARLQACTR-RSAHCL 138


>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +1

Query: 352 VHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKR 531
           VH R R     + R P+       ++  N   A K++R  R+   + +  L+ Y+     
Sbjct: 10  VHDRGRRFDQTNLR-PMAEDSTEDERSNNKRRAAKRQRNFRRINTQHRTSLEVYSFTSS- 67

Query: 532 HKWLETHIWHAKRFHMIEK 588
             W+   IW  K  H +EK
Sbjct: 68  --WILLKIWLEKNIHFVEK 84


>SB_36032| Best HMM Match : DnaJ_CXXCXGXG (HMM E-Value=1.9)
          Length = 108

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 663 TVSRCSSVTSSKCFITR 613
           TVSRC  VT S+CFI R
Sbjct: 90  TVSRCHGVTVSRCFIKR 106


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 361  RRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKR 531
            RRR      KR   K R    ++ K      +++R  RK RR+ ++L+   NRR +R
Sbjct: 1186 RRRKRKRRRKR---KRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKSLMSRENRRFRR 1239


>SB_41180| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 721

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +1

Query: 298 TESIQRTNHNKLIFQNLPVHMRRRVMSHNSK----RLPIKLREAHTKQFKNNGFAVKQKR 465
           T   Q T  NK I  N P    R   S + K    +L  + R+  TK+ K  G  VK KR
Sbjct: 15  TSQYQLTEVNKSI-SNQPGINERLGQSEDVKGPGTQLMNRGRDQQTKEDKRPGLPVKDKR 73

Query: 466 PSRKYR-RRPQNLLDE 510
           P ++    RP +L+++
Sbjct: 74  PDKQVTDDRPGHLVED 89


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 361 RRRVMSHNSKRLPIKLREAHTKQFKNNGFAVK----QKRPSRKYRRRPQNLLDEYNRRQ 525
           +R +  H  KR   + RE+   + K    +VK    QKR S K++R+ +   D++ R+Q
Sbjct: 200 KRELAKHKHKRK--RKRESAKHRLKRKRESVKHKRKQKRKSAKHKRKHKRKSDKHKRKQ 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,443,301
Number of Sequences: 59808
Number of extensions: 379422
Number of successful extensions: 1021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)