Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j06
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA...   208   4e-54
AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown prot...   173   2e-43
AE014298-1847|AAF48227.2|  320|Drosophila melanogaster CG12714-P...    33   0.49 

>AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA
           protein.
          Length = 857

 Score =  208 bits (509), Expect = 4e-54
 Identities = 97/167 (58%), Positives = 117/167 (70%), Gaps = 3/167 (1%)
 Frame = +1

Query: 193 EAAEFDATLGGTEQLPFSANSLKFAASRSIEIAAMTESIQRTNH--NKLIFQNLPVHMRR 366
           +  E+DA LGG   LP    +  +AA    EI  +    Q T    +KLIFQ LP HMRR
Sbjct: 4   QKVEYDAALGGRVTLPSHVTTYHYAAEALQEIRNLVADCQETTQRSSKLIFQTLPKHMRR 63

Query: 367 RVMSHNSKRLPIKLREAHTKQF-KNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRHKWL 543
           R MSH+ KRLP K R+AH  Q  K+    V  KRPSRKYRRRP+NL+ EY RRQ+RH WL
Sbjct: 64  RAMSHHPKRLPRKYRQAHKSQMGKSGNQPVNGKRPSRKYRRRPKNLMREYVRRQRRHVWL 123

Query: 544 ETHIWHAKRFHMIEKWGYRLAYAPCDKAFRACYRATSAHCLLQDISY 684
           ETHIWHAKRFHM+++WG+RL YA CDK +RACYRA++ HCLLQDIS+
Sbjct: 124 ETHIWHAKRFHMVDRWGHRLPYASCDKTYRACYRASAEHCLLQDISF 170


>AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown
           protein.
          Length = 797

 Score =  173 bits (421), Expect = 2e-43
 Identities = 75/110 (68%), Positives = 89/110 (80%), Gaps = 1/110 (0%)
 Frame = +1

Query: 358 MRRRVMSHNSKRLPIKLREAHTKQF-KNNGFAVKQKRPSRKYRRRPQNLLDEYNRRQKRH 534
           MRRR MSH+ KRLP K R+AH  Q  K+    V  KRPSRKYRRRP+NL+ EY RRQ+RH
Sbjct: 1   MRRRAMSHHPKRLPRKYRQAHKSQMGKSGNQPVNGKRPSRKYRRRPKNLMREYVRRQRRH 60

Query: 535 KWLETHIWHAKRFHMIEKWGYRLAYAPCDKAFRACYRATSAHCLLQDISY 684
            WLETHIWHAKRFHM+++WG+RL YA CDK +RACYRA++ HCLLQDIS+
Sbjct: 61  VWLETHIWHAKRFHMVDRWGHRLPYASCDKTYRACYRASAEHCLLQDISF 110


>AE014298-1847|AAF48227.2|  320|Drosophila melanogaster CG12714-PB
           protein.
          Length = 320

 Score = 32.7 bits (71), Expect = 0.49
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 310 QRTNHNKLIFQNLPVHMRRRVMSHNSKRLPIKLREAHTKQFKNNGFAVKQKRPSRKYRRR 489
           Q  N+ K + Q   +  RR+V    + +     R+ HTK+ +       ++  + K  RR
Sbjct: 57  QSENNGKQLLQCQRLRSRRKVTVEQAIKNGFTRRKRHTKRSEEGAKRAAKEVRAEKRERR 116

Query: 490 PQNLLDEYNRRQKRHK 537
               + + NR QK++K
Sbjct: 117 KVPKIKQQNRNQKKNK 132


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,406,948
Number of Sequences: 53049
Number of extensions: 522026
Number of successful extensions: 1208
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)