Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j04
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      28   5.8  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 417 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 521
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 498  CTERHAQLFLPPAATISVEGGDAC-APEYPGTASCKSAGVCSSAGQQMDGV 647
            C  R  QL+LP  AT  +EG  +C  P+  G      AGV       MDGV
Sbjct: 1145 CDVRDDQLYLPAYATRPLEGQTSCKCPDVVGCGVMWPAGVVIFT---MDGV 1192


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 538 QRFPSKGVTHVHLSTLEQRHANRRVCVAVLVSRW 639
           Q+   KG+TH +LS LE+    +R  +AV   RW
Sbjct: 109 QKTAYKGLTHANLSKLEE--VGQRAGLAVTAERW 140


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -1

Query: 622  LLHTPADLHDAVPGYSGAHASPPSTEIVAAGGKNNCAWRSVQECDSVLRLDGT 464
            L  TP    D +PGY  +  S   TE   A  K   A++ V +   V RL  T
Sbjct: 1894 LEQTPPPTSDRIPGYEDSEGS--DTENEQAITKRKTAFQDVSDVHGVARLQDT 1944


>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 624 HCYTHPPICMTLFQGTQVHMRHPLRRKSLLL 532
           HC  HP I +TL   T  H  HP     LLL
Sbjct: 654 HC-EHPAIAITLLLRTPCHCEHPAIANILLL 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,340,129
Number of Sequences: 59808
Number of extensions: 406224
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)