Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j03
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   3.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   3.9  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   5.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   5.1  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 597 STRKASSVLKNK*HHFLNLVLKN 529
           S +KA  ++ +K +  LN+ LKN
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKN 33


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 597 STRKASSVLKNK*HHFLNLVLKN 529
           S +KA  ++ +K +  LN+ LKN
Sbjct: 11  SRQKAPKIVNSKYNSILNIALKN 33


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
          protein.
          Length = 237

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 48 CPDTRGFGENHTTANR 1
          CPD  GF  +HT+ ++
Sbjct: 25 CPDDFGFYPHHTSCDK 40


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
          protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 48 CPDTRGFGENHTTANR 1
          CPD  GF  +HT+ ++
Sbjct: 25 CPDDFGFYPHHTSCDK 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,327
Number of Sequences: 336
Number of extensions: 2964
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)