Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j03
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    29   2.5  
08_02_1213 - 25329775-25330227                                         29   4.3  
02_01_0408 - 2972240-2975380                                           29   4.3  
08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    28   5.7  
02_01_0404 - 2945611-2948802                                           28   5.7  
02_02_0089 - 6668179-6668316,6668386-6668565,6668648-6668729,666...    28   7.5  
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    27   9.9  

>05_05_0136 -
           22631260-22631325,22631735-22631821,22631898-22632026,
           22632122-22632190,22632271-22632351,22632598-22632702,
           22632786-22633016,22633098-22634272,22634391-22634457,
           22636705-22637778,22638119-22638274,22638827-22638985,
           22639062-22639220,22639306-22639422,22639502-22639612,
           22639690-22640358
          Length = 1484

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 78  EHLNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMA 218
           E +NS+MG+  ++++   C +  N   D  L    + N E L+D+++
Sbjct: 567 EAVNSEMGLTEILQKLKTCCAVLNDSADKSLNRDNIQNEEHLTDILS 613


>08_02_1213 - 25329775-25330227
          Length = 150

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 163 PNLRCKRSQTSSR--YPI*WQATTFQRPTW 246
           PNL C RS  +SR  +P+ W     Q  TW
Sbjct: 118 PNLACARSTLASRMAWPVYWSTNFSQNLTW 147


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +3

Query: 57  IACNNYVEHLNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMASYNF 230
           ++ NN+   L+S++G +  +   F  LS+ +F    + ALQ L +  +L+ L  +YNF
Sbjct: 381 LSYNNFYGELSSEIGKLKYLS--FLSLSNNSFTNITR-ALQILKSSTNLTTLFIAYNF 435


>08_02_1547 +
           27795664-27795674,27795743-27795892,27796182-27797906,
           27799447-27799546,27799657-27800268,27800399-27800521,
           27800905-27801039,27801108-27801209,27801716-27801778,
           27801854-27802045,27802121-27802258,27802632-27802694,
           27803068-27803466
          Length = 1270

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 81  HLNSDMGVVMLVEEYFYCLSSCNFKQ 158
           HL+  M +V+LVE Y +CLS    ++
Sbjct: 342 HLDRKMSLVLLVEHYEHCLSRMRHRE 367


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 390 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRND 557
           +S+CK  S    I F + NL   ++ L SL    S+C  Q R  ++ F    L ND
Sbjct: 8   HSSCKKCSNRCFIDFLRFNLAFALLLLLSLASPTSSCTEQERSSLLQFLS-GLSND 62


>02_02_0089 -
           6668179-6668316,6668386-6668565,6668648-6668729,
           6669317-6669405,6669503-6669580,6670502-6670559,
           6670727-6670956,6671174-6671318,6671417-6671458,
           6671681-6671853
          Length = 404

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 26/69 (37%), Positives = 37/69 (53%)
 Frame = +3

Query: 66  NNYVEHLNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMASYNFSTPDL 245
           N+Y  HL+SD+GV ++    FY L+   F++     L   +N  SL+ L  SYN S   L
Sbjct: 233 NSYSHHLDSDIGVSVVDRFTFYTLAF--FEK-----LNMYSN-ASLNSLFNSYNPSM--L 282

Query: 246 DTNAYELMD 272
            + AY  MD
Sbjct: 283 LSTAYYRMD 291


>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 81  HLNSDMGVVMLVEEYFYCLSSCNFKQ 158
           +L+  M +V+LVE Y +CLS   +++
Sbjct: 541 YLDRKMSLVLLVEHYEHCLSRMRYRE 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,149
Number of Sequences: 37544
Number of extensions: 270154
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)