Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j02
         (301 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   2.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   2.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    20   5.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    20   5.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   5.0  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    19   8.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    19   8.7  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    19   8.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +2

Query: 83  SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 202
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 59  RHSQVRGISIKL-QEEERER 115
           +HSQ  G  IKL  E+ERE+
Sbjct: 202 KHSQFIGYPIKLVVEKEREK 221


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 118 TPLTLLFLKFDRDSSHLRVSETP 50
           +P  L + K DRD    R S TP
Sbjct: 82  SPGFLTYTKADRDVDLFRGSSTP 104


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 187 YVEDAGLQQY*WPATNTASYPGW 255
           YV+D+ ++   WP    A+   W
Sbjct: 527 YVDDSSVESRVWPRAAAAAERLW 549


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 82  DSSHLRVSETPH 47
           D+SH R+SE P+
Sbjct: 302 DTSHNRISEIPN 313


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 295 FYSYNLLITPATIATLGSWLC*LQAINI 212
           F+ Y +L   AT+     W+C +  + +
Sbjct: 139 FFVYVILYILATVFLAYVWICEMGVVTL 166


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 207 KSSIFNISLVSGSTSM 160
           + +I N+S+ SG+T+M
Sbjct: 421 RRAIANVSVSSGNTTM 436


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -1

Query: 295 FYSYNLLITPATIATLGSWLC*LQAINI 212
           F+ Y +L   AT+     W+C +  + +
Sbjct: 139 FFVYVILYILATVFLAYVWICEMGVVTL 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,039
Number of Sequences: 336
Number of extensions: 1254
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)