Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8j02
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 103 4e-24
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 103 6e-24
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 28 0.34
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.78
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 0.78
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 1.0
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 3.1
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 3.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 5.5
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 24 5.5
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 24 5.5
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 24 5.5
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 23 7.3
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 23 7.3
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 103 bits (248), Expect = 4e-24
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = +2
Query: 2 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDT 181
+K LRNKIAG+ THLM+R++ VRGIS KLQEEERER+D YVPEVS LE D I VD DT
Sbjct: 43 SKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDT 102
Query: 182 KDMLKMLDFNNI 217
KDMLK L +++I
Sbjct: 103 KDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 103 bits (247), Expect = 6e-24
Identities = 51/83 (61%), Positives = 63/83 (75%)
Frame = +2
Query: 2 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDT 181
+K LRNKIAG+ THLM+R++ VRGIS KLQEEERER+D YVPEVS LE D + VD DT
Sbjct: 43 SKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDT 102
Query: 182 KDMLKMLDFNNINGLQLTQPATQ 250
KDMLK L ++ I +++ PA Q
Sbjct: 103 KDMLKSLGYDQI-PVRVLAPAPQ 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 0.34
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 229 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLLFL-KFDR-DSSHL 68
L+ NI+E +++ + +YF+ M + +FW I P +L KF + ++SHL
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWMLARPKFSQINTSHL 423
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 0.78
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 65 SQVRGISIKLQEEERERRDNYVPEV 139
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 0.78
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 50 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 142
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 1.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 193 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 80
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 110 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 226
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 3.1
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 89 KLQEEERERRDNYVPEVSALEHDIIEVD 172
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 56 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 154
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 71 VRGISIKLQEEERERRDNYV 130
+ G+S+KLQE+E +R + V
Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 5.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 11 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 169
+R +IA F A H ++R S+ ++ + E +R Y+P +S + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 250 GWLWWQA*LINYKN 291
GW+ WQA L +Y+N
Sbjct: 237 GWMRWQAQLKHYRN 250
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 89 KLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNIN 220
KL E+E+ ++Y +V LEH I + + + L N
Sbjct: 82 KLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSN 125
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 23.4 bits (48), Expect = 7.3
Identities = 10/53 (18%), Positives = 25/53 (47%)
Frame = +2
Query: 92 LQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 250
+QE + +Y +++ D +DP D+ + D ++ ++ ++P Q
Sbjct: 92 MQEASDDNDTSYAERINSYIKDQDLLDPARSDVATVSDMMEVDTVEQSEPIAQ 144
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 203 DFNNINGLQLTQPATQGGYG 262
DF + + L TQP+ GG G
Sbjct: 143 DFQSKDSLSTTQPSVSGGNG 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,677
Number of Sequences: 5004
Number of extensions: 20921
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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