Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8j02
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05) 29 0.53
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 1.2
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0) 28 1.2
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3) 27 2.1
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 27 3.7
SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3) 27 3.7
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03) 26 6.5
SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6) 26 6.5
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 26 6.5
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 25 8.6
SB_11022| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9) 25 8.6
SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11) 25 8.6
>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
Length = 249
Score = 29.5 bits (63), Expect = 0.53
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 23 IAGFATHLMRRLRHSQVRGISIKLQE--EERERRDNYVPEVSALEHDIIEVDPDTKDML 193
I + ++MR+ R + R ++ +LQE E++R+D E++ L I +D KD L
Sbjct: 44 IRNLSRNIMRKWREAHERKVNKRLQELRIEKKRKDGEAKEIARLVTRKIPLDVLAKDWL 102
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 217 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 113
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = +2
Query: 77 GISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 241
G+ +E +RE Y VSA +H + D + + +LD N+ +GL +T
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515
Query: 242 ATQGGYGG 265
++G GG
Sbjct: 516 ISEGAGGG 523
>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
Length = 163
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +2
Query: 5 KPLRNKIAGFATHLMRRLRHSQVRGIS-IKLQEEERERRDNYVPEVS-ALEHDII-EVDP 175
K LR ++ FA+H RRLR + +R K+ + ++ Y P VS A+ II ++D
Sbjct: 56 KALRGRVGLFASHCERRLRRTALRSRGWTKILKNHTLFQELY-PRVSRAISGTIIFDLDH 114
Query: 176 DTKDMLKMLD----FNNINGLQLTQPATQ 250
+ + + D ++N + +P+T+
Sbjct: 115 KRRSTISLQDNTFPRQSLNAKSIAEPSTR 143
>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1087
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 44 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 187
L +R RHS+ S + RE+ +++ ++ LE++ D DT++
Sbjct: 54 LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101
>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -1
Query: 268 PATIATLGSWLC*LQAINIVEVQHL----QHILGVGVYFDDVMFESRHFWDIVVTPLTLL 101
P T+ T + + +QAI++ ++QH+ Q + V + D +S + + VT L
Sbjct: 1034 PVTVVTDDASVAAIQAIDVTDIQHISGGTQITIPVAIATDTGTIQSHTYDESAVTAFGRL 1093
Query: 100 FLKFDRD 80
F+ D
Sbjct: 1094 ITAFNWD 1100
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 131 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 226
PE+S + H I PD +D +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140
>SB_29818| Best HMM Match : zf-AD (HMM E-Value=1.3)
Length = 275
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 69 KCEESLSNFRKRSVRGVTTMSQKCLL 146
KC SL F+K ++G T +S+K L+
Sbjct: 112 KCILSLGRFKKAKIKGQTFVSKKALV 137
>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
Length = 1020
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 187 YVEDAGLQQY*WPATN-TASYPG 252
Y+ED G+ Y P T+ T+ YPG
Sbjct: 637 YIEDIGIPGYYQPCTSKTSEYPG 659
>SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)
Length = 479
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 11 LRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDM 190
+RNK A F H++ LRH R +S + ++ RD +P++S + P +D
Sbjct: 14 VRNKSAIFLHHMLPVLRHVSNRNLSAIIWDD--MMRDWELPQLSRAHKPFADFVP-IRDR 70
Query: 191 LKMLDFNNINGLQL 232
L NN+ L+L
Sbjct: 71 LD----NNLKYLEL 80
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 86 IKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGG 256
+K EEE E +DN E E D E D + +D + N + P ++GG
Sbjct: 960 LKQHEEEVEGQDNAGDEDGEEEDDENEEDENEEDASEEEQPNVTSSFSFRTPKSRGG 1016
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 47 MRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHD 157
MR++ ++ R KLQEEE ERR ++ A+E +
Sbjct: 1279 MRKIAEARER----KLQEEEEERRRQEEEQLRAIEEE 1311
>SB_11022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 108 VRGVTTMSQKCLLSNMTSSK*TPTPRIC 191
+R T S +CL N S K +P P +C
Sbjct: 70 IRDSTDNSGQCLFENSGSRKASPLPLLC 97
>SB_41282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 60 DTRKCEESLSNFRKRSVRGVTTMSQK 137
DT++ E N R R+ +GVT SQ+
Sbjct: 89 DTKEAMEYYGNARTRNAKGVTIPSQR 114
>SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)
Length = 602
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +2
Query: 53 RLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNING 223
+L+H+ IK E ++ Y PE+ + D+ +D + K F + G
Sbjct: 419 KLQHTNSVTYKIKDLNNEDKQGSFYEPELLKAKQDVFRIDKVIRRDYKKASFGEVEG 475
>SB_22897| Best HMM Match : C2 (HMM E-Value=4.1e-11)
Length = 314
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 80 ISIKLQEEERERRDNYVPEVSALEHDIIEVDPDT 181
+++K + EERER PE+ L ++ VDP T
Sbjct: 20 VAMKSRMEERER---LKPEIFQLIREVFRVDPKT 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,090
Number of Sequences: 59808
Number of extensions: 150913
Number of successful extensions: 419
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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