Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8j02
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 99 7e-22
AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protei... 31 0.20
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 29 0.82
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 28 1.1
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 28 1.1
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 28 1.1
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 28 1.4
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 27 3.3
AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical ... 26 4.4
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 26 5.8
U13876-13|AAA21172.3| 370|Caenorhabditis elegans Prion-like-(q/... 26 5.8
AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacti... 26 5.8
U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical pr... 25 7.6
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 25 7.6
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 98.7 bits (235), Expect = 7e-22
Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Frame = +2
Query: 2 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHD---IIEVD 172
+KPLRNKIAG+ THLMRR+ VRGISIKLQEEERERRDNY+PE+S ++ I+VD
Sbjct: 43 SKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVD 102
Query: 173 PDTKDMLKMLDFN 211
DT DMLK FN
Sbjct: 103 TDTSDMLKAAGFN 115
>AC006605-8|AAK85439.2| 741|Caenorhabditis elegans Ligase protein 4
protein.
Length = 741
Score = 30.7 bits (66), Expect = 0.20
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 6 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 143
SL GI++ L G S+T RKCEE L +F V+G+T ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 28.7 bits (61), Expect = 0.82
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 24 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 164
+L L H+ TRKCEE L +F ++ ++ +++K L N+ S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 2 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 118
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 74 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 232
RG ++ E+ + R D+ Y + +A++ ++ DPD + ++L ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 2 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 118
T L NK AG L R+ + + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 28 WICHTFNEASQTLASARNLYQTSGRGA 108
W CH FN A ++ A+ L Q A
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAA 176
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 179 TKDMLKMLDFNNINGLQL 232
T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 44 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 151
++ R +SQ+ +SI L+ E +ER+D+Y + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217
>AF040645-4|AAB94974.1| 306|Caenorhabditis elegans Hypothetical
protein F52C6.8 protein.
Length = 306
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 24 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 164
+L L H+ TRKCEE L +F ++ ++ +++K L ++ S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLEDLKMS 268
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 14 RNKIAGFAT-HLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDM 190
++KI +A ++++ +R Q R KL+ E ER++ + +++ + ++P
Sbjct: 1590 KHKIMDYAMPYMIQVMRDYQTR--LEKLERSEHERKEE---KAEQQQNNGMTMEPQL--- 1641
Query: 191 LKMLDFNNINGLQLTQPATQGGYGG 265
ML + Q+T P T GGYGG
Sbjct: 1642 --MLTYG-APAPQMTYPGTTGGYGG 1663
>U13876-13|AAA21172.3| 370|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 46
protein.
Length = 370
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 131 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPA 244
P SA+ +++ D K K +FN NG++ +PA
Sbjct: 170 PAASAVATAVVDTDSSAK---KATEFNKANGIEQPKPA 204
>AF016672-8|AAB66117.4| 998|Caenorhabditis elegans Jnk interacting
protein (scaffoldprotein) protein 1 protein.
Length = 998
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 72 CEESLSNFRKRSVRGVTTMSQKC 140
C S NF + RGV+ M+QKC
Sbjct: 190 CWSSPPNFFDETFRGVSPMNQKC 212
>U53147-3|AAM29659.1| 550|Caenorhabditis elegans Hypothetical
protein C01B7.1b protein.
Length = 550
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 179 TKDMLKMLDFNNING 223
T D LK+LDF ING
Sbjct: 251 TADFLKLLDFTGING 265
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical
protein C01B7.1a protein.
Length = 935
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 179 TKDMLKMLDFNNING 223
T D LK+LDF ING
Sbjct: 251 TADFLKLLDFTGING 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,514,979
Number of Sequences: 27780
Number of extensions: 117494
Number of successful extensions: 444
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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