Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8j01
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)               29   3.9  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   6.7  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          28   8.9  

>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 121 KTGPYKIKNLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRV 300
           K+GP K   +D +P K+T   D ++  V T  N   +  Y G  +    NG  L     +
Sbjct: 404 KSGPVKADVVDASPSKKTDVSDWDVNQVVTWMNNLGLEEYSGTVKQNKVNGAKLKKLAAL 463

Query: 301 E-ESMKTLTVGKEDLLMWGI 357
           + E+ K+L   KED  M GI
Sbjct: 464 KYENAKSLF--KEDWGMDGI 481


>SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = +3

Query: 489 SLCVPH--VQQIVAMRRFYFENVQQARVPRRHRRVSGIHFGR*GQPH*RDRGH----CAS 650
           SLCV +  V+Q   +RR  F ++   RV  R +RV  +  G+  +   R+RG      AS
Sbjct: 23  SLCVIYQLVKQTFLLRRKKFTDINSDRVNSRKKRVEEVMDGQDAKDEERERGEFDMTFAS 82

Query: 651 SRRREYDSQTKVY 689
             R + D+ T+ Y
Sbjct: 83  LPRVDNDALTRRY 95


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 473 FTNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTR 294
           FT+S   +     + S      SLP    +S+ +SH  L+   S S+ PT SV   S+  
Sbjct: 663 FTSSTIFSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNSATPTTSVLPSSTVN 722

Query: 293 V 291
           +
Sbjct: 723 L 723


>SB_57214| Best HMM Match : Osteopontin (HMM E-Value=1.3)
          Length = 486

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 607 AEGNPINVTVDTALHRDGVSMILKQKSTFTTRQVKA 714
           +E N +N  VDTA  R G S ILK K  +T ++  A
Sbjct: 202 SEENELNTKVDTAPFRKGTSPILKNK-WYTNKRFSA 236


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
 Frame = -3

Query: 514  CCTCGTQSDCYSAVSPTLCL*PTGRGLRCRE---NTLRCHCPNG 392
            CC  G Q DC       +C  P G    C E   +  RC C  G
Sbjct: 1676 CCFNGCQKDCVLMTDALVCPKPCGPNAECVEFMNSERRCLCKPG 1719


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 711 FYLARGERRLLFENHTHAVSMKRSVHGHVNGVALSVQNVYLT 586
           F +A G   L+ E H HAVS    ++  + G  LS    ++T
Sbjct: 149 FVIAEGAGILVLEEHQHAVSRGAHIYAEMLGYGLSGDAHHIT 190


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 235 GYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEEL-IDRWGS 405
           G+ G+  A     G + P+  + E  ++  +   +L M  ++Q CE+G +L ID +G+
Sbjct: 19  GFAGFIAAQLAEHG-VPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGT 75


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 376 GEELIDRWGSDSEECFRDNEGRGQW 450
           G  L   W   +  CFRDN+  G+W
Sbjct: 286 GTLLTSEWVLTAARCFRDNKRAGEW 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,744,210
Number of Sequences: 59808
Number of extensions: 471112
Number of successful extensions: 1544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)