Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i24
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   9e-05
SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)                    32   0.52 
SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)                      29   3.7  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)                    28   6.4  
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                28   6.4  
SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          28   6.4  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)           28   8.5  
SB_45774| Best HMM Match : DUF1261 (HMM E-Value=4.4)                   28   8.5  

>SB_46445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 17/43 (39%), Positives = 30/43 (69%)
 Frame = +1

Query: 124 NIYGKYDEKRSLELIKESLNLGINYLETGPWYGQGSSEKVIGK 252
           +++ +  E+ S++++  +L  GINY++T PWYG   SE V+GK
Sbjct: 59  SVFRETREEESIQVVHHALKSGINYIDTAPWYGHNKSEMVLGK 101


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 11/158 (6%)
 Frame = +1

Query: 154 SLELIKESLNLGINYLETGPWYGQGSSEKVIGKALV--GVPRDSYYIGSKVG-RYDKDTL 324
           +L ++K +L  G   ++T   Y    SE  + KA+   G+PR   +I +K+  RY     
Sbjct: 351 TLSVVKTALETGYRLIDTAQGYPL--SEPQVAKAIADSGIPRKDIFIITKLHPRY----- 403

Query: 325 KMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVHD-------ITFAP-DTSVVLKETLPVLE 480
                  E T   ++ +L  L  DY+DL  +H        +T A  +     KE+   +E
Sbjct: 404 ----LGYEPTLKSVEMSLRALSTDYIDLFLIHSKTCDDFLLTCAEGEPRGTWKESWKAME 459

Query: 481 QAVRDGKARFIGIADYDIDLMKXXXXXXXXKISTILSY 594
           +  R GK R +G++++++D ++         +S + ++
Sbjct: 460 ELHRQGKIRSLGVSNFNVDELQELVNFATVPVSAVQNW 497


>SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)
          Length = 498

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +1

Query: 364 LDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKARFIGIADY 528
           ++ +L  +  D VD+  +H    APD    ++E+L  ++Q  ++GK +  G+++Y
Sbjct: 343 MNTSLKRMKRDKVDIFYLH----APDHKTPIEESLKAVDQLHKEGKFKEFGLSNY 393


>SB_31710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 418 HDITFAPDTSVVLKETLPVLEQAVRDGKARFI 513
           HDI    ++ +  KE L  ++Q V+ GK RF+
Sbjct: 269 HDIPLFANSEICTKEALNPIKQDVKKGKVRFV 300


>SB_15270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 448 PKCPEQ--KLY---HVPGSDRHSLSRVVKEYCQDQLLFSLQKSQTSLECPCRSGRLYSRC 284
           P+C E+  K+Y   H P + R    + +KE C D L F  +K+  ++  P R  R +S  
Sbjct: 36  PECTERVLKMYESGHTPATARQQYLKELKESCNDDLEFHRKKANRAV-VPRR--RNFSYL 92

Query: 283 NTNHGE 266
            T +G+
Sbjct: 93  YTQYGK 98


>SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 235 EKVIGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTL--SLLGLD 396
           +++I + L+  P+ S+ +G+KV R+  +     DFS +  + GL   +   L GLD
Sbjct: 161 QEIISQVLM-TPKYSFKLGAKVFRFLYENFLFHDFSLQNFSTGLQEVIIELLNGLD 215


>SB_9241| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 204

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 448 PKCPEQ--KLY---HVPGSDRHSLSRVVKEYCQDQLLFSLQKSQTSLECPCRSGRLYSRC 284
           P+C E+  K+Y   H P + R    + +KE C D L F  +K+  ++  P R  R +S  
Sbjct: 135 PECTERVLKMYESGHTPATARQQYLKELKESCNDDLEFHRKKANRAV-VPRR--RNFSYL 191

Query: 283 NTNHGE 266
            T +G+
Sbjct: 192 YTQYGK 197


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 448 PKCPEQ--KLY---HVPGSDRHSLSRVVKEYCQDQLLFSLQKSQTSLECPCRSGRLYSRC 284
           P+C E+  K+Y   H P + R    + +KE C D L F  +K+  ++  P R  R +S  
Sbjct: 380 PECTERVLKMYESGHTPATARQQYLKELKESCNDDLEFHRKKANRAV-VPRR--RNFSYL 436

Query: 283 NTNHGE 266
            T +G+
Sbjct: 437 YTQYGK 442


>SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)
          Length = 949

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 304 RYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVDLIQVH 420
           R+ +DTL + DF    T  G+    +   LD  DL+ VH
Sbjct: 343 RHTRDTLDLADFMGVGTGQGVSTRHTRDVLDLADLVGVH 381


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = +1

Query: 154 SLELIKESLNLGINYLETGPWYGQGSSEKVIGKAL--VGVPRDSYYIGSKVGRYDKDTLK 327
           S + +  +L  G   ++T   Y    +E+ +G+A+    +PR   Y+ +KV         
Sbjct: 88  SKQAVLWALESGYRLIDTASRY---HNEQSVGEAVRCSNIPRCEIYVVTKV--------Y 136

Query: 328 MFDFSAEKTAAGLDNTLSLLGLDYVDLIQVHDITFAPDTSVVLKETLPVLEQAVRDGKAR 507
             +   ++T      +L+ LGL YVDL  +H     P  S V+     +++   R G  R
Sbjct: 137 FTEHGYKETMDAFYKSLTRLGLGYVDLYLIH----FPVPSGVVGSWQAMIDLRSR-GLIR 191

Query: 508 FIGIADYDI 534
            IG+++++I
Sbjct: 192 SIGVSNFNI 200


>SB_20106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 448 PKCPEQ--KLY---HVPGSDRHSLSRVVKEYCQDQLLFSLQKSQTSLECPCRSGRLYSRC 284
           P+C E+  K+Y   H P + R    + +KE C D L F  +K+  ++  P R  R +S  
Sbjct: 144 PECTERVLKMYESGHTPATARQQYLKELKESCNDYLEFHRKKANRAV-VPRR--RDFSYL 200

Query: 283 NTNHGE 266
            T +G+
Sbjct: 201 YTQYGK 206


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
 Frame = -3

Query: 445 KCPEQKLYHVPGSDRHSLSRVVKEYCQD--QLLFSLQKSQTSLECPCRSGRLYSRCNTNH 272
           +CP  K  H PG+D H +   +        Q     +  +    C C  G    RC T  
Sbjct: 412 ECPGTKSTHGPGADSHDMCLDIDNCASSPCQNGGRCESLKDDFRCACPGGFTGRRCETEQ 471

Query: 271 GELQLKP 251
            E    P
Sbjct: 472 DECLSDP 478


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +1

Query: 244 IGKALVGVPRDSYYIGSKVGRYDKDTLKMFDFSAEKTAAGLDNTLSLLGLDYVD--LIQV 417
           IG+  V +   +Y   +K+  +  +TLK  D +AEK  A +D+     G  ++D  L   
Sbjct: 41  IGEDRVQLAVITYSTDAKIA-FRFNTLKGNDLNAEKVGALIDSMKWKKGYTFIDKALQLA 99

Query: 418 HDITFAPDTSVVLKETLPVLEQAVRDGK 501
           HD  F P     ++  +P +   + DGK
Sbjct: 100 HDEIFTPVAG--MRMDVPKVLIVLTDGK 125


>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
          Length = 930

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 328 SLECPCRSGRLYSRCNTNHGELQLK 254
           S  C CR G L + C T H   QLK
Sbjct: 43  SFTCQCRPGYLGNNCQTGHCLTQLK 67


>SB_45774| Best HMM Match : DUF1261 (HMM E-Value=4.4)
          Length = 392

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -3

Query: 382 VKEYCQDQLLFSLQKSQTSLECPCRSGRLYSRCNTNHGELQLKPSQ*PFRSCPD 221
           V  + +  ++F++++  + L+CP    +L+S     + E   +  +  FR+C D
Sbjct: 20  VGSFYRFHIIFTIRRILSELQCPLPRDKLFSWNKNFYSEAAYQKLRTEFRTCSD 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,076,098
Number of Sequences: 59808
Number of extensions: 395558
Number of successful extensions: 1170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)