Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i17
         (514 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.52 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   1.6  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   2.8  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 413 IVLS*TLPKKSNTLTVSILFNLILVSLACIGSNRLRAPTD*VDKIFKLS 267
           ++ S T P++   L    L N I +++  +GS    A TD   K F++S
Sbjct: 348 LMFSATFPEEVQQLAGKFLLNYIFIAVGIVGS----ACTDVEQKFFQVS 392


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -3

Query: 176 ICVCAEGFAGGXXXXXXRVCD 114
           IC C  GF G        +CD
Sbjct: 46  ICTCKPGFTGSNCQNRINLCD 66



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -3

Query: 173 CVCAEGFAGGXXXXXXRVCD 114
           C C EGF G         CD
Sbjct: 362 CTCPEGFYGKNCEFSGYDCD 381


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -3

Query: 95  ISSISFIEAIMVEFDKQR 42
           ++++S +  +MV+FDK+R
Sbjct: 307 LNTVSTLLIVMVQFDKER 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.128    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,916
Number of Sequences: 336
Number of extensions: 2214
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)