Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i07
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.41 
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    29   0.96 
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   2.2  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   2.9  
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    27   3.9  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    27   3.9  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    27   3.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    26   6.7  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    25   8.9  

>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 116

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 255 KVQANLDNIATQVNDSMLY*HFISFKNIIIVFFHK 151
           K   ++ N+A  V +S+LY  FI F  II V  H+
Sbjct: 5   KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHR 39


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +2

Query: 23  WKRFVNQQKKTWKHWILYLKMRIIVSR*NKFKMKHDFCVQVHHL*KKTIII 175
           WKR  +++K+ W+ WI + K +I     N   ++ +FC  V    ++++I+
Sbjct: 233 WKRINSEEKRNWEEWIKH-KYKIP----NDTNIELEFCFSVTDRKEQSVIL 278


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 28  KVCESAKKDMEAL-DLVFKNADNSESLKQIQNETRFLCASTSFMKEND 168
           K+   AK+D++ L  L+   A N +  K I  E  + C    F+K ND
Sbjct: 227 KIFRQAKQDLDVLIQLIVDEALNDDIFKSIA-EICYRCQKHEFVKAND 273


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 19  TVEKVCESAKKDMEALDLVFKNADNSESLKQIQNETRFLCASTSFMKENDNN 174
           T E V  S  +   A D +  +ADN E   +++     L A  S   E D N
Sbjct: 33  TYEDVANSEDEFYNAQDKILFDADNGEQADELELSDEELVALESSSDEEDGN 84


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +3

Query: 261 STTSSFLMKKRLMQDLKNICFD------QILPIYYTMWRNIRTQNFLWLLSVNVMFKVGM 422
           S   S++ KK ++   KNI FD      QI   + T+  N+R  N+L L   N + KVGM
Sbjct: 28  SAARSYVGKKEIIVP-KNIQFDLEGEQLQITGPHGTL--NMRFPNYLNLSKTNDILKVGM 84

Query: 423 D 425
           D
Sbjct: 85  D 85


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 182 LKILLSFSFINDVLAHRNRVSF*ICFNDSLLSAFLNT--RSNASMSFFAD-SQTFSTVHN 12
           LKIL   S I D + + +  SF +    S + A +NT  R + S++F  D  Q +S  H 
Sbjct: 411 LKILFEVSNIEDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHK 470

Query: 11  SSS 3
            +S
Sbjct: 471 PAS 473


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 549 KLRKINNYNLSIID*KYFLSCYNNII 626
           K+ K+ +++ SI   KY+LSCY  I+
Sbjct: 477 KVEKVKHFDDSIRVLKYWLSCYERIL 502


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 672 NYCKNYYYIFQ 640
           NYC+N+YY FQ
Sbjct: 463 NYCQNWYYAFQ 473


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 321 NKYFLDLALVFSSSKRMKLW-NSKVQANLDNIATQVNDSM 205
           N+  + +AL  ++  R KL+  SKV  N+DNI   +N+S+
Sbjct: 56  NEEEVGVALKEANVPRSKLFITSKVMHNVDNIPEALNESL 95


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 NFILFDEEKTNARSKKYLF*PNFTNLLYYVEKYKNT 373
           + ++ D ++ +  S+   + PNF   L Y+E Y+N+
Sbjct: 298 SLVVTDGQEPDTYSENVHYTPNFKGALAYLEAYQNS 333


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -2

Query: 227 PHKLMTACFINTLYHLKILLSFSFINDVLAHRNRVSF*ICFNDSLLSAFLNTRSNAS 57
           P+K     F++T++H  +  +     D+L +R   ++ +    + + + LN  +NAS
Sbjct: 64  PNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNAS 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,176
Number of Sequences: 5004
Number of extensions: 62164
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)