Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i07
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0106 - 11898493-11901471                                         30   2.3  
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527     28   7.1  

>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 309 KNICFDQILPIYYTMWRNIRTQNFLWLLSV 398
           KN  F++ILP++Y M +N +  N + LL++
Sbjct: 624 KNNLFEEILPLFYHMIKNDQKPNIITLLNL 653


>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
          Length = 1015

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 106 KQIQNETRFLCASTSFMKENDNNIFK*YKVLIKHAVINLCGYVVKVCLNF--AIPQLHP 276
           +Q+  E   LC +     E ++ + +   VL+ H   +L G+V+K CL +    P  HP
Sbjct: 394 QQLPQEYAKLCGNLGMHLEREDTLERMKHVLV-HNYTSLPGHVIKACLLYFGIFPSGHP 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,381,073
Number of Sequences: 37544
Number of extensions: 285515
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)