Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i07
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     29   3.6  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   8.3  

>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 4    EEELCTVEKVCESAKKDMEALDLVFKNADNSESLKQIQNET 126
            EE+ C +  V  SAK+ + A++   +NA+N   L+++Q  T
Sbjct: 920  EEQNCLLRTVA-SAKRILSAVNTAKRNAENLRRLEELQKRT 959


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical protein
            F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 4    EEELCTVEKVCESAKKDMEALDLVFKNADNSESLKQIQNET 126
            EE+ C +  V  SAK+ + A++   +NA+N   L+++Q  T
Sbjct: 920  EEQNCLLRTVA-SAKRILSAVNTAKRNAENLRRLEELQKRT 959


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 4   EEELCTVEKVCESAKKDMEALDLVFKNADNSESLKQIQNET 126
           EE+ C +  V  SAK+ + A++   +NA+N   L+++Q  T
Sbjct: 873 EEQNCLLRTVA-SAKRILSAVNTAKRNAENLRRLEELQKRT 912


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 354 WRNIRTQNFLWLLSVNVMFKV 416
           W NI+T NF+W  + NV  ++
Sbjct: 401 WNNIQTDNFVWSATANVFIRL 421


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 104 NDSLLSAFLNTRSNASMSFFADSQTFSTVHNSS 6
           +DS LSAFL       +  F D+  F+T+ N +
Sbjct: 759 SDSALSAFLRGELRCEVPDFCDTSMFNTIRNQA 791


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,328
Number of Sequences: 27780
Number of extensions: 337419
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)