Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i07
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.4  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 648 YNNNFYNNSMK*SC 689
           YNNN YNN+   +C
Sbjct: 338 YNNNNYNNNYNNNC 351


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN+ K
Sbjct: 100 YNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN+ K
Sbjct: 100 YNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN+ K
Sbjct: 100 YNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN+ K
Sbjct: 100 YNNNNYNNNCK 110


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 543 KQKLRKINNYNLSIID*KYFLSCYNNIIQI*TTEKYNNNFYNNSMK 680
           K++ R      +S +   Y  S YNN         YNNN YNN  K
Sbjct: 304 KERERSKEPKIISSLSNNYKYSNYNNY------NNYNNNNYNNYNK 343


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 612 YNNIIQI*TTEKYNNNFYNNSMK 680
           YNN         YNNN YNN  K
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKK 351


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 222 VWLCCQGLLELCYSTTSSFLMKKR 293
           VW+C   +L LC  +   +L   R
Sbjct: 146 VWMCTASILNLCAISLDRYLAVTR 169


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 LSCYNNIIQI*TTEKYNNNFYNNS 674
           +S  +N  +      YNNN YNN+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 LSCYNNIIQI*TTEKYNNNFYNNS 674
           +S  +N  +      YNNN YNN+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 LSCYNNIIQI*TTEKYNNNFYNNS 674
           +S  +N  +      YNNN YNN+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 LSCYNNIIQI*TTEKYNNNFYNNS 674
           +S  +N  +      YNNN YNN+
Sbjct: 82  ISSLSNNYKYSNYNNYNNNNYNNN 105


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN  K
Sbjct: 96  YNNNNYNNYKK 106


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 648 YNNNFYNNSMK 680
           YNNN YNN  K
Sbjct: 106 YNNNNYNNYKK 116


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 648 YNNNFYNNS 674
           Y+NN+YNN+
Sbjct: 313 YSNNYYNNN 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,508
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 34
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)