Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i03
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.1  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    26   5.6  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    25   9.9  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 245  TYLCG--LCDSVK*VTGIVLNLFYLILHVRVS*TYLLGCPDFLEIVRFSF 388
            T  CG  L DS+   TG ++   YL +H         GCP FL   R+ F
Sbjct: 1974 TKACGILLLDSIS-NTGTIMPTPYLDIHGETDLQLRRGCPQFLNQKRYDF 2022


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 512 ESACP*ASEGYQRK-TSRTATTANVEGDSRTAGPGGSSLT-MDTLKSVSI 655
           +S+C   ++  Q K T   A     E  SR +GPGG S+T ++  K++ +
Sbjct: 7   QSSCEEFTDSQQDKMTKLLAMQLGPEYISRRSGPGGGSVTYLEAWKAIEL 56


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 490 MSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQ 594
           +SK +KLR  +S   GR+    +  G  G+  G Q
Sbjct: 5   VSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQ 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,268
Number of Sequences: 5004
Number of extensions: 52743
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)