Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i03
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0194 + 15645571-15645978                                         33   0.27 
09_06_0363 - 22551848-22552915                                         31   0.63 
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728     29   2.5  
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    29   3.3  
12_01_0992 + 10067834-10068133                                         29   4.4  
01_05_0335 + 21074117-21074241,21074299-21074929,21075359-210753...    28   7.7  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   7.7  
01_04_0139 - 16570515-16571141                                         28   7.7  
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229           28   7.7  

>10_08_0194 + 15645571-15645978
          Length = 135

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +1

Query: 469 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEEC 648
           +++R   +++ Q+LR+R     G+   +   +   GE +G  ++GG  G+   +G S  C
Sbjct: 21  KQRRLETVTRRQRLRRRRQWRDGKAEARVGEETAEGEGKGEGESGGREGRGETDGGSSAC 80


>09_06_0363 - 22551848-22552915
          Length = 355

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 500 CKSFESACP*ASEGYQRKTSRTATTANVEGDSRTAGPGGSSLTMDTLKSVS 652
           CKS   A P +S   + + S +ATT++    SR  GP  SS++  T  + S
Sbjct: 2   CKSRSDAVPVSSVASRSRRS-SATTSSSSSSSRRPGPASSSISGSTASAAS 51


>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
          Length = 502

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 80  RAFSCHSFPFPFACYGRSVHCEHPDLTIVTISFESRFRTNDMAAKI*CAKNLIQCTYLC 256
           R   C    FP A YGR + CEH        S  S +  ++   KI   K +++  ++C
Sbjct: 104 RVHICCRCEFPIALYGRLIPCEHAFCLACARSDSSCYLCDERIQKIQTVK-MMEGIFIC 161


>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 535 GRLSTKDESDGDNGECRGRQQNGGARGKLSYNGYSEECLDRLE 663
           GR S  D+ +G  G  RGR+  GG    +S  G     LD  E
Sbjct: 247 GRYSDLDDDEGGFGSLRGRRGRGGRMSGVSRRGGRGSDLDDSE 289


>12_01_0992 + 10067834-10068133
          Length = 99

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 454 EGVTMREKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGD 570
           EG  +R +RGG   ++++ RKR S   G ++ +   +G+
Sbjct: 29  EGGGVRPQRGGGRGEVEEERKRCSTMAGEVALRQRRNGE 67


>01_05_0335 +
           21074117-21074241,21074299-21074929,21075359-21075399,
           21078458-21078560,21078755-21079601,21079938-21080689,
           21080712-21080970,21081011-21081354
          Length = 1033

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 427 FVNVLPT--ISEGVTMREKRGGAMSKMQKLRKRLSLSFGRLST 549
           F++V+P   I +GV M +KRGG + K+  +   ++   GR S+
Sbjct: 165 FIDVVPKKKIHDGVEMEKKRGGKIGKL--MSSNVTYGMGRPSS 205


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 92  CHSFPFPFACYGRSVHCEHP 151
           C   P   AC GR + C+HP
Sbjct: 892 CAGLPIAIACIGRLLSCKHP 911


>01_04_0139 - 16570515-16571141
          Length = 208

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 469 REKRGGAMSKMQKLRKRLSLSFGRLSTKDESDGDNGECRGRQQNGGARG 615
           +++R   +++ Q+LR+R     G+   +   +   GE +G  ++GG  G
Sbjct: 21  KQRRLETVTRRQRLRRRRQWREGKAEARVGEETAEGEGKGEGESGGREG 69


>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
          Length = 265

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -2

Query: 500 ILLIAPPLFSLIVTPSD 450
           +LL+ PPLFS+ VTPS+
Sbjct: 60  LLLLPPPLFSVPVTPSE 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,090
Number of Sequences: 37544
Number of extensions: 358279
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)