Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8i03
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    31   0.56 
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF039047-8|AAK95882.1|  149|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 550 KDESDGDNGECRGRQQNGGARGKLSYNGYSEECLDRL 660
           K + DG+ G  RG ++ GG  G+  Y+  SE+  D +
Sbjct: 211 KPDEDGERGGDRGDRRGGGGGGRDRYHNQSEKTYDEI 247


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 113 FACYGRSVHCEHPDLTIVTISFESRFRTNDMAAKI*CAKNLIQCTYLCGLCDS 271
           + C   +  CE+P L  V  S     +  D A K   A   ++C   CGLC +
Sbjct: 104 YCCETSAYSCENPPLPSVNCSTIKPIQCTDPAWKAIIA---MECPATCGLCSA 153


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 468 HCHAFGYGGQHVDKVNNPNAC*LTHSQKLKRTISKKSGQPS 346
           H H  G GG+ + KV    +C +      K + S KS Q S
Sbjct: 115 HSHIIGKGGRGIQKVMKMTSCHIHFPDSNKYSDSNKSDQVS 155


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 624 RELPPGPAVLLSPSTXXXXXXXXXXXX*PSEAQGQALSKLLHFAHSAAPFLSHCHAFGYG 445
           ++LP GP VLLSP++             P E +  AL+ L     S  PF +     G+G
Sbjct: 626 KQLPDGP-VLLSPTSIITAFRREVIERRPEEFKIAALTDLKQLFPSGNPFYA-----GFG 679

Query: 444 GQHVDKVN 421
            +  D V+
Sbjct: 680 NRITDVVS 687


>AF039047-8|AAK95882.1|  149|Caenorhabditis elegans Hypothetical
           protein K11D12.11 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 515 SACP*ASEGYQRKTSRTATTANVEGDSRTAGP 610
           S CP  S    + T R  TT  V GD +  GP
Sbjct: 38  SGCPVGS-ALVKNTDRNTTTCEVRGDEKCTGP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,748
Number of Sequences: 27780
Number of extensions: 307780
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)