Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h22
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    46   8e-04
UniRef50_A1DJD9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_A4XU75 Cluster: Transcriptional regulator, LysR family;...    32   10.0 

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
 Frame = -3

Query: 191 ILRHINTVDPG*SDN--RHDNRLIVAAAGYSPNPDHA 87
           I +H+ +V     D   RHDNRLIVAAA YSPNPDHA
Sbjct: 872 IRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHA 908


>UniRef50_A1DJD9 Cluster: Putative uncharacterized protein; n=1;
           Neosartorya fischeri NRRL 181|Rep: Putative
           uncharacterized protein - Neosartorya fischeri (strain
           ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
           fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
          Length = 407

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = -1

Query: 478 FNSSHIEIGESNGSCCPQ-GTG-KDDTNEIVILHTGHAQSCSERSFFSYRRRKFGFPPAV 305
           F   + EI E+    CP  G G ++D   +V +++  + + S    F +R     FPPA+
Sbjct: 39  FTYFYAEITEAVLLSCPMTGNGIEEDFKLLVAIYSTTSFTPSTILDFLHRTPGDPFPPAL 98

Query: 304 QGRKSNFSSLGTDKCACALVSTSALTH 224
           +  +S F SLG+D      VST+A  H
Sbjct: 99  KAFQS-FRSLGSDAALRQTVSTAAKIH 124


>UniRef50_A4XU75 Cluster: Transcriptional regulator, LysR family;
           n=17; Pseudomonadaceae|Rep: Transcriptional regulator,
           LysR family - Pseudomonas mendocina ymp
          Length = 331

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 475 NSSHIEIGESNGSCCPQGTGKDDTNEIVILHTGHAQSCSERSFFSYRRRKFGFPP 311
           +S H++ GE     C QG    +   I  L      S   R   S+ +++FGFPP
Sbjct: 262 SSEHLQRGELIPLFCEQGLPAAEPVSIYALRLEREASPRTRLLLSFLKQRFGFPP 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,258,055
Number of Sequences: 1657284
Number of extensions: 12969959
Number of successful extensions: 29116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29112
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)