Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h22
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    29   0.74 
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   1.7  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   3.9  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    25   6.9  
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s...    25   6.9  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 403 WYHPSPYPEDSTTRCFPR 456
           +YH  P+P     RCFPR
Sbjct: 239 FYHHHPFPSSEIARCFPR 256


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 300 PCTAGGKPNFRRR*EKKDLSEQD 368
           P  +GG P+F R  EK DL++ D
Sbjct: 233 PANSGGPPDFGRIREKSDLADSD 255


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 136 IALSLPPLATPRILITHHWWA 74
           +AL LPP  +P I + + W+A
Sbjct: 194 VALELPPACSPPIELVNRWYA 214


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 237 DVDTNAHAHLSVPREEKLDFLPCTAGGKPNFRRR 338
           D D + H  + VP+E   D +      KP  R+R
Sbjct: 16  DSDDDRHGPVEVPKEASADVMATRKIAKPKSRKR 49


>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
           subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 71

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 212 RHCCARVILRHINTVD 165
           R+CC R+IL H++ ++
Sbjct: 42  RYCCRRMILTHVDLIE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,668
Number of Sequences: 5004
Number of extensions: 54095
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)