Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h22
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)                   30   1.8  
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)                 28   7.2  
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
          Length = 1051

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 355 SRNKTGRVQYVKLQFHWYHPSPYPEDSTTRCFPRFLYGY 471
           S   TG ++   + FH     P  ++S +RCF RF++ Y
Sbjct: 657 SSELTGEIRLDGISFHLVKVRPIFKESYSRCFGRFVHRY 695


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 192 YPSTTMAENFRCVRADVDTN 251
           YP  TMA N +C RA + TN
Sbjct: 7   YPRATMATNTKCSRATIATN 26


>SB_14101| Best HMM Match : CHB_HEX_C (HMM E-Value=7.9)
          Length = 321

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 192 YPSTTMAENFRCVRADVDTN 251
           YP  TMA N +C RA + TN
Sbjct: 7   YPRATMATNTKCSRATIATN 26


>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -1

Query: 496 VSFFIKFNSSHIEIGESNGSCCPQGTGKD 410
           VS F   N +   IGESNG  CP   GKD
Sbjct: 141 VSKFESRNPTSKNIGESNGESCP-ARGKD 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,605,172
Number of Sequences: 59808
Number of extensions: 407733
Number of successful extensions: 952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)