Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h18
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                  136   2e-32
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  29   2.7  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score =  136 bits (328), Expect = 2e-32
 Identities = 64/135 (47%), Positives = 86/135 (63%)
 Frame = +1

Query: 283 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 462
           ++ E  +K S D DT ILFTK             AG   +  V F N G  D++V+ MEA
Sbjct: 134 EEKEDALKPSPDADTVILFTKNTEQ------QFSAGLVSKCLVSFSNNGRNDFMVDMMEA 187

Query: 463 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 642
           S RYP DY+YYIQNFTA  YN  VKP  +A+F Y+F P+E+F GRPFGL++ L Y+D  G
Sbjct: 188 SLRYPQDYSYYIQNFTAFQYNTVVKPGHQASFEYAFRPHESFGGRPFGLSINLLYKDTDG 247

Query: 643 NAYQEAVYNQTLNIV 687
             Y++AV+N+T+ +V
Sbjct: 248 KMYRDAVFNETVQLV 262


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +1

Query: 325 TTILFTKPVPSLGDLTFDIQ-AGYPVEFFVGFINKGSVDYVVESMEASFRYPMDYTYYIQ 501
           TT+ FTK V    DL+ D    GY V   V            ++ E +   P+ YT  I+
Sbjct: 744 TTVRFTKGVARFTDLSIDTPGTGYVVNMTVSTTPSSMYHGTAQTEEITIEEPLLYTSRIE 803

Query: 502 NFTALPY 522
               L Y
Sbjct: 804 AILNLQY 810


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 510 GEVLNVVCVVHWIPERCLH 454
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_2546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 253 NQVVGDDALVDDDESVVKSSQDID 324
           N  V DD + DDD+ VVK   D D
Sbjct: 219 NDAVDDDVVNDDDDDVVKDDGDDD 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,343,617
Number of Sequences: 59808
Number of extensions: 399140
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)