Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2NP20 Cluster: FP protein; n=3; Nucleopolyhedrovirus|R...    90   1e-17
UniRef50_O10317 Cluster: Uncharacterized 10.2 kDa protein; n=9; ...    86   2e-16
UniRef50_Q4KT30 Cluster: ORF-50 peptide; n=2; Nucleopolyhedrovir...    53   1e-06
UniRef50_Q90178 Cluster: Uncharacterized 10.9 kDa protein in LEF...    51   4e-06
UniRef50_Q80LQ8 Cluster: Putative uncharacterized protein; n=1; ...    47   7e-05
UniRef50_Q0N455 Cluster: Ac60-like protein; n=1; Clanis bilineat...    45   3e-04
UniRef50_A0EYU7 Cluster: ChaB2; n=1; Ecotropis obliqua NPV|Rep: ...    44   5e-04
UniRef50_Q0IL48 Cluster: ORF71; n=6; Nucleopolyhedrovirus|Rep: O...    42   0.002
UniRef50_Q91BH3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.23 
UniRef50_A0QJ25 Cluster: ChaB family protein; n=11; Bacteria|Rep...    33   1.2  
UniRef50_O76666 Cluster: Putative uncharacterized protein; n=2; ...    31   3.7  
UniRef50_Q228X2 Cluster: Mitochondrial carrier protein; n=1; Tet...    31   4.9  
UniRef50_A5KD83 Cluster: Variable surface protein Vir1-like; n=1...    31   4.9  
UniRef50_A0DE81 Cluster: Chromosome undetermined scaffold_47, wh...    31   4.9  
UniRef50_A0BRT6 Cluster: Chromosome undetermined scaffold_123, w...    31   6.5  
UniRef50_UPI0000499FE7 Cluster: PufA family RNA binding protein;...    30   8.6  
UniRef50_Q4T8Y7 Cluster: Chromosome undetermined SCAF7690, whole...    30   8.6  

>UniRef50_Q2NP20 Cluster: FP protein; n=3; Nucleopolyhedrovirus|Rep:
           FP protein - Hyphantria cunea nuclear polyhedrosis virus
           (HcNPV)
          Length = 94

 Score = 89.8 bits (213), Expect = 1e-17
 Identities = 41/59 (69%), Positives = 47/59 (79%)
 Frame = -2

Query: 250 MLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPRPDA 74
           MLP+   NLP+NGKRIF KFYDRSL+K+ S  IA KLA CAVRKKY LID +W+ RPDA
Sbjct: 1   MLPQKLHNLPHNGKRIFYKFYDRSLRKFGSKEIAVKLAVCAVRKKYTLIDGQWRARPDA 59


>UniRef50_O10317 Cluster: Uncharacterized 10.2 kDa protein; n=9;
           Nucleopolyhedrovirus|Rep: Uncharacterized 10.2 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 90

 Score = 85.8 bits (203), Expect = 2e-16
 Identities = 38/59 (64%), Positives = 46/59 (77%)
 Frame = -2

Query: 250 MLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPRPDA 74
           MLP+   NLP+NGKRIF KFYDRSL+K+ S  +A KLA CAVRKKY L+  +W+ RPDA
Sbjct: 1   MLPEKLHNLPHNGKRIFYKFYDRSLRKFGSREVAVKLAVCAVRKKYTLVRGQWRARPDA 59


>UniRef50_Q4KT30 Cluster: ORF-50 peptide; n=2;
           Nucleopolyhedrovirus|Rep: ORF-50 peptide - Chrysodeixis
           chalcites nucleopolyhedrovirus
          Length = 91

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = -2

Query: 256 IDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYI-LIDCKWQPRP 80
           I  LP    +LPYNGKRIF KF++R+  K KS  I+ K+A  AV++KY+   D +W  R 
Sbjct: 5   ITELPPSTYSLPYNGKRIFLKFFNRAYTKTKSEPISFKIAWQAVKRKYVHNKDDEWVARK 64

Query: 79  DA 74
           +A
Sbjct: 65  NA 66


>UniRef50_Q90178 Cluster: Uncharacterized 10.9 kDa protein in
           LEF8-FP intergenic region; n=6;
           Nucleopolyhedrovirus|Rep: Uncharacterized 10.9 kDa
           protein in LEF8-FP intergenic region - Lymantria dispar
           multicapsid nuclear polyhedrosis virus (LdMNPV)
          Length = 95

 Score = 51.2 bits (117), Expect = 4e-06
 Identities = 27/66 (40%), Positives = 39/66 (59%)
 Frame = -2

Query: 271 IILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKW 92
           +  S +D LP   + LPYNGKRI+ KFY++S++   S   A  +A  AV++KY     +W
Sbjct: 2   LFTSVLD-LPTSTRALPYNGKRIYLKFYNKSIKMRNSPTTADAIAWTAVKRKYYCDRGEW 60

Query: 91  QPRPDA 74
            P  DA
Sbjct: 61  LPFADA 66


>UniRef50_Q80LQ8 Cluster: Putative uncharacterized protein; n=1;
           Adoxophyes honmai NPV|Rep: Putative uncharacterized
           protein - Adoxophyes honmai nucleopolyhedrovirus
          Length = 91

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = -2

Query: 226 LPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKW 92
           LP + +RI+ KFY+R+ Q Y+S   A K+A  AVR+KY L + +W
Sbjct: 11  LPADARRIYNKFYNRTYQLYRSKATAEKIAWAAVRRKYHLHNHQW 55


>UniRef50_Q0N455 Cluster: Ac60-like protein; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: Ac60-like protein - Clanis
           bilineata nucleopolyhedrosis virus
          Length = 87

 Score = 45.2 bits (102), Expect = 3e-04
 Identities = 21/50 (42%), Positives = 34/50 (68%)
 Frame = -2

Query: 262 SFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKY 113
           S I  LP+  + LPY+GKRIF K ++ +L+ Y++   A ++A  AV++KY
Sbjct: 3   SSIKDLPRSTRVLPYHGKRIFMKAFNNALKTYETEEAAYRVAWAAVKRKY 52


>UniRef50_A0EYU7 Cluster: ChaB2; n=1; Ecotropis obliqua NPV|Rep:
           ChaB2 - Ecotropis obliqua NPV
          Length = 87

 Score = 44.4 bits (100), Expect = 5e-04
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = -2

Query: 247 LPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKY 113
           LP    +LPY+GKRIF K+Y + L++  +   ATK+A  AV++KY
Sbjct: 17  LPVSTLHLPYHGKRIFLKYYTQCLERCMTKKGATKVAWSAVKRKY 61


>UniRef50_Q0IL48 Cluster: ORF71; n=6; Nucleopolyhedrovirus|Rep:
           ORF71 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 90

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = -2

Query: 247 LPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPRPDA 74
           LP   + LPY+G+RIF K ++ +    +    A + A  AV +KY+  + KW  RPDA
Sbjct: 9   LPSNVRKLPYHGRRIFLKVFNSTYDGDEGR--AFRYAWAAVNRKYVKRNGKWVARPDA 64


>UniRef50_Q91BH3 Cluster: Putative uncharacterized protein; n=1;
           Spodoptera litura NPV|Rep: Putative uncharacterized
           protein - Spodoptera litura multicapsid
           nucleopolyhedrovirus (SpltMNPV)
          Length = 174

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 247 LPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPR 83
           LP + Q++P   KR+F   + R         IA + A  AV ++Y+ ++ +W P+
Sbjct: 16  LPYFDQDMPARAKRLFRNTFRRYQDSGGGEEIAIRAAWEAVNREYVKLNNRWIPK 70


>UniRef50_A0QJ25 Cluster: ChaB family protein; n=11; Bacteria|Rep:
           ChaB family protein - Mycobacterium avium (strain 104)
          Length = 137

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 247 LPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPR 83
           LP   Q      +R F K +D + Q+Y S   A ++A  AV+  +  +   W+P+
Sbjct: 15  LPSTLQRSSAKAQRTFAKAHDAAAQEYGSEERAHRVAYSAVKHSFEKVGDHWEPK 69


>UniRef50_O76666 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 361

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 111 MYFFLTAQHASLVAICVDLYFCKLRS*NFSN 203
           +Y+   A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146


>UniRef50_Q228X2 Cluster: Mitochondrial carrier protein; n=1;
           Tetrahymena thermophila SB210|Rep: Mitochondrial carrier
           protein - Tetrahymena thermophila SB210
          Length = 1997

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 259 FIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKS 161
           +ID L +YY+NL Y  K+  + + + SL+ +K+
Sbjct: 782 YIDKLKEYYENLYYEKKKDAKTYKENSLEDFKN 814


>UniRef50_A5KD83 Cluster: Variable surface protein Vir1-like; n=1;
           Plasmodium vivax|Rep: Variable surface protein Vir1-like
           - Plasmodium vivax
          Length = 266

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = -2

Query: 241 KYYQNLPYNGKRIFEKFYDRSLQKYKSTHI-ATKLAC-----CAVRKKYILIDCKWQPRP 80
           KY     YNG +   K YD    +YK+  I  TK +C     CA   +  +  CKW   P
Sbjct: 118 KYINEEIYNGFKELHKLYDH-FNEYKTESIKETKPSCGKGDECADLYELYVRKCKWMHNP 176

Query: 79  D 77
           D
Sbjct: 177 D 177


>UniRef50_A0DE81 Cluster: Chromosome undetermined scaffold_47, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_47,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 680

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 262 SFIDMLPKYYQNLPYNGKRIFE 197
           + +D+ PK Y+N P NGKR+ E
Sbjct: 255 TLLDIQPKMYKNTPLNGKRLIE 276


>UniRef50_A0BRT6 Cluster: Chromosome undetermined scaffold_123, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_123, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1343

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 235  YQNLPYNGKRIFEKFYDRSLQKYKST-HIATKLACCAVRKKYILIDCKW 92
            YQ L Y+ +R   K+Y ++LQ+  S   I  KL    +   +IL + KW
Sbjct: 927  YQRLLYSQRRELHKYYAQALQEIPSQFEIDEKLEAQRLEHTWILAEQKW 975


>UniRef50_UPI0000499FE7 Cluster: PufA family RNA binding protein;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: PufA family
           RNA binding protein - Entamoeba histolytica HM-1:IMSS
          Length = 438

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 196 KFYDRSLQKYKSTHIATKLACCAVRKKYILID 101
           K Y+ S++KY S  +   + CC  R++ IL++
Sbjct: 337 KLYEYSMKKYSSNVVEKCIRCCETREQTILVN 368


>UniRef50_Q4T8Y7 Cluster: Chromosome undetermined SCAF7690, whole
           genome shotgun sequence; n=2; Percomorpha|Rep:
           Chromosome undetermined SCAF7690, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 485

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 274 FIILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYK 164
           F +LS I   P  Y+   Y+G+ +   FY+  LQK K
Sbjct: 62  FTVLSAIPRTPPVYKLSDYDGETVEGTFYEAELQKVK 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,515,434
Number of Sequences: 1657284
Number of extensions: 3137441
Number of successful extensions: 7665
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7663
length of database: 575,637,011
effective HSP length: 71
effective length of database: 457,969,847
effective search space used: 10075336634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)