Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   1.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   2.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   2.7  
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po...    24   4.7  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    23   6.3  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    23   6.3  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    23   8.3  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    23   8.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   8.3  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 154  YVSTYIFVNYDRRIFQISSYRYREGFDN 237
            Y+S Y F  +D       +YR  EGF+N
Sbjct: 991  YMSCYTFNYFDYACLMDHAYRLYEGFNN 1018


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 PNSTTC*LGSYMCRLIFL*TTIVEFFKYPLTVIGKVLIIFR*HINKRQYNK 274
           P+S TC L +  C+LIF  T++      P  ++ K +  F  +  K+Q++K
Sbjct: 588 PSSHTCALQAMYCQLIFSNTSV------PSAIVSKCVAFFW-NAAKKQHSK 631


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 274 FIILSFIDMLPKYYQNLPYNG 212
           FI  S   +LP YYQ + YNG
Sbjct: 364 FIPQSVPQLLPIYYQTIFYNG 384


>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 262 SFIDMLPKYYQNLPYNGKRIF 200
           S +D+L +Y++  P N  ++F
Sbjct: 59  SNLDLLARYFEKYPENANKVF 79


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 226 LPYNGKRIFEKFYDRSLQKYKSTHIATKLAC 134
           + Y GK+  +K  D  +QK    +I++ LAC
Sbjct: 271 IQYVGKQDPKKHLDAEVQKCIDNNISSMLAC 301


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 139 LAW*LYVSTYIFVNYDRRIFQISSY 213
           ++W L V  Y+   YD+ IF I  Y
Sbjct: 217 MSWDLLVYKYMMYVYDKWIFHIPLY 241


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 268 ILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVR 122
           +  FID L  Y   L      I  KFYD S +  +  +I  K+     R
Sbjct: 361 VSKFIDKLESYESQLSLILVDIEAKFYDPSNEDIQFRYIFLKMVFWTAR 409


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 86  WLPFTVYQYVFFPNSTT 136
           W+  TV Q +FF NS T
Sbjct: 92  WITTTVIQALFFSNSIT 108


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 268  ILSFIDMLPKYYQNLPYNGKRIF 200
            +L+ +++LP     LP+N  R+F
Sbjct: 4022 LLNLLELLPTMTHTLPHNRFRLF 4044


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,784
Number of Sequences: 5004
Number of extensions: 14805
Number of successful extensions: 47
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)