Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    27   3.0  
12_01_0369 + 2829094-2830986                                           26   3.9  
07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883...    26   3.9  
11_08_0062 + 28122857-28123771                                         26   5.2  
04_03_0090 - 11037111-11037568,11039606-11039671,11040524-110407...    25   9.0  
01_01_0732 - 5698863-5700413                                           25   9.0  

>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
            27403297-27403449,27403544-27403644,27403945-27404041,
            27404542-27404651,27404775-27404878,27405129-27405308,
            27405398-27405741,27405841-27405905,27405981-27406450,
            27406939-27407793,27408045-27408116,27408475-27408575,
            27409069-27409170,27409295-27409456,27409665-27411230,
            27411384-27411602,27413924-27414198,27414291-27414596,
            27414727-27415012,27415085-27415087,27415162-27415416,
            27415537-27415803
          Length = 2236

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 271  IILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQK 170
            I+L+F  +LPK+ +  P + KR+ +K  +    K
Sbjct: 1638 ILLNFDTLLPKFIKVYPRDYKRVLDKLKEEKAAK 1671


>12_01_0369 + 2829094-2830986
          Length = 630

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 268 ILSFIDMLPKYYQNLP-YNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCK 95
           I+S+  M+  Y  N       ++F + +    Q  + T  +T  AC A   KY +I+CK
Sbjct: 122 IISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAA---KYAIIECK 177


>07_03_1251 + 25186333-25188027,25188113-25188208,25188292-25188381,
            25188473-25188577,25188764-25188823,25188931-25188993,
            25189077-25189172,25189982-25190146,25191104-25191277,
            25191387-25191452,25191556-25191654,25192714-25192857,
            25193312-25193401
          Length = 980

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 253  DMLPKYYQNLPYNGKRIFEKFYDRSLQKYK 164
            D+  +YYQ L  N  + F+ FY+  + K +
Sbjct: 941  DLAEQYYQKLQGNDIKAFKSFYESLVMKIR 970


>11_08_0062 + 28122857-28123771
          Length = 304

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 274 FIILSFIDMLPKYYQNLPYNGKRIFEKFYDR 182
           FI   + D+LP   +   Y G  ++++FYD+
Sbjct: 262 FIKQLYYDLLPNVQKAKNYGGIMLWDRFYDK 292


>04_03_0090 -
           11037111-11037568,11039606-11039671,11040524-11040724,
           11041049-11041157
          Length = 277

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 187 DRSLQKYKSTHIATKLACCAVRKKYI 110
           D  L ++K+     KLAC AV K Y+
Sbjct: 239 DPDLHEHKNGKFTEKLACTAVHKFYM 264


>01_01_0732 - 5698863-5700413
          Length = 516

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 154 YVSTYIFVNYDRRIFQISSYRYREGFD 234
           YV+  +F N+ RR F +S    RE +D
Sbjct: 324 YVAMKMFANFHRRDFNLSFLDEREFYD 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,933,664
Number of Sequences: 37544
Number of extensions: 76100
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)