Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)                  26   4.1  
SB_47715| Best HMM Match : SEA (HMM E-Value=0.001)                     26   5.4  
SB_58247| Best HMM Match : TPR_1 (HMM E-Value=1.2e-19)                 25   9.4  
SB_45881| Best HMM Match : TPR_2 (HMM E-Value=7.7)                     25   9.4  
SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)                 25   9.4  
SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_35032| Best HMM Match : MED7 (HMM E-Value=7.6e-08)
          Length = 418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 202 FEKFYDRSLQKYKSTHIATKLACCAVRKKYILIDCKWQPRP 80
           +EK YD+ +Q++   +  T L     RK Y   DCK+ P+P
Sbjct: 367 YEK-YDKEIQEFLKNNGFTHL-WNKPRKTYQSEDCKYAPKP 405


>SB_47715| Best HMM Match : SEA (HMM E-Value=0.001)
          Length = 238

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 268 ILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHI 152
           + S  D   + Y NL  N KR+F K Y R +  +    I
Sbjct: 38  VSSLSDRESREYINLSNNIKRVFTKIYKRDVPGFSHMEI 76


>SB_58247| Best HMM Match : TPR_1 (HMM E-Value=1.2e-19)
          Length = 284

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 262 SFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKS 161
           S  ++  +YY+++P N  R +    + +++ Y+S
Sbjct: 44  SVTEICMRYYRSIPENAMRYYRSVPENAMRYYRS 77


>SB_45881| Best HMM Match : TPR_2 (HMM E-Value=7.7)
          Length = 120

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 262 SFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKS 161
           S  ++  +YY+++P N  R +    + +++ Y+S
Sbjct: 44  SVTEICMRYYRSIPENAMRYYRSVPENAMRYYRS 77


>SB_34884| Best HMM Match : RVT_1 (HMM E-Value=8.1e-25)
          Length = 439

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 274 FIILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKK 116
           FII      +  Y  ++  NGK I ++ Y + L  Y  +H++ K     + KK
Sbjct: 207 FIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILHIAKK 259


>SB_23765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 274 FIILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKK 116
           FII      +  Y  ++  NGK I ++ Y + L  Y  +H++ K     + KK
Sbjct: 207 FIIFHPPQKISNYTLSIKINGKCIKKEKYIKYLGIYIDSHLSWKYQILHIAKK 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,051,962
Number of Sequences: 59808
Number of extensions: 96766
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)