Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    31   0.096
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    26   3.6  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    26   3.6  
AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical pr...    25   6.3  
Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...    25   8.4  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 0.096
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 111 MYFFLTAQHASLVAICVDLYFCKLRS*NFSN 203
           +Y+   A HAS + + V + FC+++S NF+N
Sbjct: 116 IYYLAAAFHASSLYLAVGMAFCRVKSLNFAN 146


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 170 FL*TTI--VEFFKYPLTVIGKVLIIF 241
           FL TT+  + FF+YP  + G ++IIF
Sbjct: 22  FLSTTLHSMSFFQYPSHIFGAIVIIF 47


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 253 DMLPKYYQNLPYNGKRIFE 197
           D+ P++Y N+P +G  +FE
Sbjct: 67  DVGPRFYMNVPADGSEVFE 85


>AF022985-4|AAB69965.1|  362|Caenorhabditis elegans Hypothetical
           protein T15B7.12 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 117 FFLTAQHASLVAICVDLYFCKLRS*NFSN 203
           +   A HAS + + V + FC+++S N +N
Sbjct: 119 YLAVAFHASSLYLAVGMAFCRVKSLNIAN 147


>Z79695-1|CAB01970.1|  366|Caenorhabditis elegans Hypothetical
           protein F27D4.5 protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 166 YIFVNYDRRIFQISSYRYREG 228
           YIF  YD+ + + + +RYR G
Sbjct: 126 YIFPAYDQLVNEAAKFRYRSG 146


>Z81100-3|CAD92386.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.9 protein.
          Length = 333

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 114 YFFLTAQHASLVAICVDLYF 173
           Y FL A H   +A C+ +YF
Sbjct: 132 YPFLIANHILAIAYCISVYF 151


>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 250 MLPKYYQNLPYNGKRIFEKFY 188
           +LP YY NL  N + +  KF+
Sbjct: 210 LLPGYYMNLNQNPRTLLPKFF 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,636,059
Number of Sequences: 27780
Number of extensions: 79297
Number of successful extensions: 217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)