Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h12
         (281 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   1.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   1.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   3.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   5.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   6.7  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    19   8.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 120 FLTAQHASLVAICVDLYFCKLRS*NFSNILLP 215
           +LT   AS V +  DL+F   +  +F NI++P
Sbjct: 106 YLTLTDASRVWM-PDLFFSNEKEGHFHNIIMP 136


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 120 FLTAQHASLVAICVDLYFCKLRS*NFSNILLP 215
           +LT   AS V +  DL+F   +  +F NI++P
Sbjct: 106 YLTLTDASRVWM-PDLFFSNEKEGHFHNIIMP 136


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 LYVSTYIFVNYDRRIFQISSYR 216
           L +  Y+F  YD  +  ISS++
Sbjct: 45  LKLKRYLFCEYDPNVRPISSHQ 66


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 235 YQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAV 125
           ++N+    + IF  ++  S  K     I   L CC V
Sbjct: 112 FRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCGV 148


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 65  AIVGVRPWLPFTVYQYVFFPNSTTC*LGSYMCR 163
           AI+GV       V  ++ +P      + SY CR
Sbjct: 22  AIIGVDECQATPVIHFLQYPGCVPKPIPSYACR 54


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 219 ITVRGYLKNSTIVVYKNISRHI*LPS*HVVLLGKN 115
           I +  Y    T+ +  N  RH+  P     + GKN
Sbjct: 15  ILITSYFVTPTMSIKCNCKRHVIKPHICRKICGKN 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,617
Number of Sequences: 438
Number of extensions: 1308
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)