Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h11
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.47 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   1.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   1.9  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   5.8  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   7.7  
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    25   7.7  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   7.7  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 409 SQHDYDRDQIKRELNSLRRNVHDMCTR-SGTSFDCNKFLRSDDMTPV 546
           S+ D D ++++ +L +L      +  R S ++FD +KF+R++D   V
Sbjct: 450 SERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKFIRTEDKDTV 496


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +1

Query: 343  CNFIQ*YIMYSTSKINNARVVASQHDYDRDQIKRELNSL--RRNVHDMCTRSGTSFDCNK 516
            CN    Y++ STSK+ N  +      YD  +++   N+L     + D+  +    +   K
Sbjct: 796  CNNGTKYVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGK 855

Query: 517  FLRSDDMTPVVTTITPKRTADYKITEYVSDVKTIKPSNRPL 639
            F  S  ++PV  ++       YK  + +     + PSN+ L
Sbjct: 856  FPDSVKLSPVQQSVLLALGLQYKTIDTLEKEFNL-PSNQLL 895


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 221 DGMIKNEDVQRFNRINRNDLI-SACMQINVQTYMPNATIDMRKQPNCIYF 75
           D + K  +V+RF R+ +   I S    I  Q    N TID +  P C+++
Sbjct: 50  DEVKKQREVKRFKRVGKRGKIGSPSSSIRKQ----NDTIDWKNSPLCVFY 95


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 493 GTSFDCNKFLRSDDMTPVVTTITPKRTADYKIT 591
           G +FD  K + S+++  V+  I P+ T  YK++
Sbjct: 395 GCNFDLYKKIVSNNVESVLVEIIPRLTEKYKVS 427


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 260 PHFDHLTRLRDLIDGMIKNEDVQRFNRINR 171
           P FD+ T  R+ +D   +++  + FN INR
Sbjct: 130 PRFDYDTFYREELDKKHRDKSYRYFNNINR 159


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = -2

Query: 365 IYYWIKLH*MKLTYKMVSLLKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQR 189
           I Y IKL   ++ ++        ++L+R Y   ++P      ++ D +  + KN+ + R
Sbjct: 89  IVYIIKLQDSEIHHRYSEFASLRVQLSRLYPTCLVPPLPDKHKIMDYLINVTKNQRMSR 147


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 526 SDDMTPVVTTITPKRTADYKIT-EYVSDVKTIKPSNRPLVESGPLVQEAA 672
           SD   P + T++    A   +  E   ++K I PSN+P  +  PL++  A
Sbjct: 396 SDANNPTIGTVSGLEAAMQDVLKEKKQEMKNIDPSNQPSDQFIPLLKTCA 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,188
Number of Sequences: 5004
Number of extensions: 51041
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)