Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h11
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0032 - 13953323-13955269                                         30   2.0  
03_02_0310 + 7315185-7316820,7318332-7318879                           30   2.0  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   4.5  
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688     28   6.0  
12_02_0123 - 13930138-13932471                                         28   7.9  

>09_04_0032 - 13953323-13955269
          Length = 648

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 323 KMVSLLKYALRLTREYKENIIPHFDHLTRLRDLIDGMIKNEDVQRFNRINR 171
           +M+ LLK A+  T +  E      +   R+  ++D +I+N DV  F+ +++
Sbjct: 598 EMMRLLKLAVECTEQRPERRPTMAEVAARIEHIVDTVIRNADVDDFDSVSQ 648


>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 523 RSDDMTPVVT-TITPKRTA-DYKITEYVSDVKTIKPSNRPL 639
           +S DM  + T TITP +++ ++K T  + D   +KPS +PL
Sbjct: 568 QSTDMRSLQTPTITPPKSSFNFKTTTSILDTDALKPSPKPL 608


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 508  CNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 615
            C  FLRS ++ PV+  +  +++ D  I+EY S + T
Sbjct: 1221 CRLFLRSSELLPVIVHL--RQSPDPAISEYASAIAT 1254


>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
          Length = 241

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 571 FFWA*SLSLRGSCHRCVETCYNQNSCLN-ACTYRARYVASYLV 446
           F W  S  LR S    VE C NQ  CL  A   +++ V  YL+
Sbjct: 188 FCWL-SCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLI 229


>12_02_0123 - 13930138-13932471
          Length = 777

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
 Frame = -2

Query: 263 IPHFDHLTR---------LRDLIDGMIKNEDVQRFNRINRN 168
           +PHF H  R         LRD  D M KN D+Q F+RI  +
Sbjct: 676 MPHFTHSVRPYGDIFSVNLRDTTD-MAKNRDIQEFHRITHS 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,729
Number of Sequences: 37544
Number of extensions: 312766
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)