Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8h11
(684 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein. 30 6.7
U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived n... 30 6.7
BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor al... 30 6.7
AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived... 30 6.7
AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived... 30 6.7
AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FH... 30 6.7
AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FH... 30 6.7
AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor al... 30 6.7
AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein. 30 6.7
>U97145-1|AAC51647.1| 464|Homo sapiens RET ligand 2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>U93703-1|AAB61922.1| 464|Homo sapiens glial cell line-derived
neurotrophic factor receptor beta protein.
Length = 464
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>BC041688-1|AAH41688.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>AY941828-1|AAX46325.1| 359|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2b protein.
Length = 359
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 123 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 158
>AY326396-1|AAP88378.1| 331|Homo sapiens glial cell line-derived
neurotrophic factor family receptor alpha2c protein.
Length = 331
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 95 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 130
>AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 6.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 148 MQAEIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKCGIMFSLYSRVK 291
M+ E+K LR K CT +I ++R +++++ + ++ + Y R K
Sbjct: 131 MEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRSQVIKATYGRAK 178
>AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 445
Score = 30.3 bits (65), Expect = 6.7
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 148 MQAEIKSLRLMRLKRCTSSFLIMPSIRSRNRVKWSKCGIMFSLYSRVK 291
M+ E+K LR K CT +I ++R +++++ + ++ + Y R K
Sbjct: 152 MEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRSQVIKATYGRAK 199
>AF002700-1|AAC52036.1| 464|Homo sapiens GDNF family receptor alpha
2 protein.
Length = 464
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 155 ACMQINVQTYMPNATIDMRKQPNCIYFR-ICQYCHL 51
AC + QT +P+ + + +++PNC+ R +C+ HL
Sbjct: 228 ACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHL 263
>AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.
Length = 1956
Score = 30.3 bits (65), Expect = 6.7
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +1
Query: 379 SKIN-NARVVA-SQHDYDRDQIKRELNSLRRNVHDMCTRSGTSFDCNKFLRSDDM-TPVV 549
SKI ARV S+ + ++I EL + R + D C F+ K + DD+ T +V
Sbjct: 933 SKIQLEARVKELSERVEEEEEINSELTARGRKLEDEC------FELKKEI--DDLETMLV 984
Query: 550 TTITPKRTADYKITEYVSDVKTIKPSNRPLVESGPLVQEA 669
+ KRT ++K+ +V+ + L + +VQEA
Sbjct: 985 KSEKEKRTTEHKVKNLTEEVEFLNEDISKLNRAAKVVQEA 1024
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,836,171
Number of Sequences: 237096
Number of extensions: 1677021
Number of successful extensions: 3530
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3529
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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