Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h11
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z81537-6|CAB04378.1|  106|Caenorhabditis elegans Hypothetical
           protein F41D3.7 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 514 KFLRSDDMTPVVTTITPKRTADYKITEYVSDV 609
           K L   D+T  VTT+T +  AD KI   V D+
Sbjct: 59  KLLEGIDVTEAVTTVTSEVKADLKIAIVVDDL 90


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 160 FRLACKSTFRRTCPTPR*ICANNPIVYIFE 71
           F  A  S F     TP  IC +NP+V IF+
Sbjct: 153 FSKALHSLFAPNMTTPEEICVSNPLVEIFK 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,419
Number of Sequences: 27780
Number of extensions: 300426
Number of successful extensions: 916
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)