Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h09
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.75 
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)                     28   7.0  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          28   9.2  

>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 121 KTGPYKIKNLDITPPKETLQKDVEITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRV 300
           K+GP K   +D +P K+T   D ++  V T  N   +  Y G  +    NG  L     +
Sbjct: 404 KSGPVKADVVDASPSKKTDVSDWDVNQVVTWMNNLGLEEYSGTVKQNKVNGAKLKKLAAL 463

Query: 301 E-ESMKTLTVGKEDLLMWGI 357
           + E+ K+L   KED  M GI
Sbjct: 464 KYENAKSLF--KEDWGMDGI 481


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 473 FTNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPTSHCCLIPHMSKSSLPTVSVFMDSSTR 294
           FT+S   +     + S      SLP    +S+ +SH  L+   S S+ PT SV   S+  
Sbjct: 663 FTSSTIFSTTASINFSSSLRQTSLPTLVFSSTGSSHSALLSSNSNSATPTTSVLPSSTVN 722

Query: 293 V 291
           +
Sbjct: 723 L 723


>SB_53495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 489 SLCVPH--VQQIVAMRRFYFENVQQARVPRRHRRVSGIHFGR*GQPH*RDRG 638
           SLCV +  V+Q   +RR  F ++   RV  R +RV  +  G+  +   R+RG
Sbjct: 23  SLCVIYQLVKQTFLLRRKKFTDINSDRVNSRKKRVEEVMDGQDAKDEERERG 74


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
 Frame = -3

Query: 514  CCTCGTQSDCYSAVSPTLCL*PTGRGLRCRE---NTLRCHCPNG 392
            CC  G Q DC       +C  P G    C E   +  RC C  G
Sbjct: 1676 CCFNGCQKDCVLMTDALVCPKPCGPNAECVEFMNSERRCLCKPG 1719


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 729 LWRQVGGRFLTWCSTLRLMHLL 664
           LWR   G +L W S +R  HLL
Sbjct: 551 LWRNTKGSYLLWLSDVRPSHLL 572


>SB_49615| Best HMM Match : EAL (HMM E-Value=4e-36)
          Length = 242

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 235 GYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCEVGEEL-IDRWGS 405
           G+ G+  A     G + P+  + E  ++  +   +L M  ++Q CE+G +L ID +G+
Sbjct: 19  GFAGFIAAQLAEHG-VPPSNLIVEITESAVMADPELAMGQLQQLCELGVQLSIDDYGT 75


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 376 GEELIDRWGSDSEECFRDNEGRGQW 450
           G  L   W   +  CFRDN+  G+W
Sbjct: 286 GTLLTSEWVLTAARCFRDNKRAGEW 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,359,031
Number of Sequences: 59808
Number of extensions: 482137
Number of successful extensions: 1528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)